Analysis of interatomic Contacts of Structural Units in PDB entry:
3GF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GF8 entry

There is 1 chain in PDB entry 3GF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 34GLN 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3GF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 57Right-handed alpha
Helix 2
2
A
80 84Right-handed 310
Helix 3
3
A
121 124Right-handed 310
Helix 4
4
A
187 189Right-handed 310
Helix 5
5
A
262 268Right-handed alpha
Helix 6
6
A
270 274Right-handed 310
Helix 7
7
A
277 285Right-handed alpha
Helix 8
8
A
313 317Right-handed 310
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There are 4 sheets in PDB entry 3GF8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 78first strand
Strand 2
A
59 65anti-parallel
Strand 3
A
96 104anti-parallel
Strand 4
A
145 154anti-parallel
Strand 5
A
160 168anti-parallel
Strand 6
A
37 42parallel
Strand 7
A
89 91anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
201 203anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
214 216parallel
Strand 3
A
191 197anti-parallel
Strand 4
A
245 250anti-parallel
Strand 5
A
256 261anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
230 235anti-parallel
Strand 3
A
171 179anti-parallel
Strand 4
A
287 294parallel
Strand 5
A
300 305anti-parallel
Strand 6
A
308 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il