Analysis of interatomic Contacts of Structural Units in PDB entry:
3GKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GKM entry

There is 1 chain in PDB entry 3GKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LYS 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3GKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 15Right-handed 310
Helix 2
2
A
27 31Right-handed 310
Helix 3
3
A
45 58Right-handed alpha
Helix 4
4
A
58 65Right-handed alpha
Helix 5
5
A
76 88Right-handed alpha
Helix 6
6
A
99 105Right-handed alpha
Helix 7
7
A
145 159Right-handed alpha
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There are 2 sheets in PDB entry 3GKM. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
17 19anti-parallel
Strand 3
A
93 95anti-parallel
Strand 4
A
68 73parallel
Strand 5
A
35 39parallel
Strand 6
A
124 128anti-parallel
Strand 7
A
134 139anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 113first strand
Strand 2
A
116 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il