Analysis of interatomic Contacts of Structural Units in PDB entry:
3GLS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GLS entry

There are 6 chains in PDB entry 3GLS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 122LEU 394
B
 LEU 123LEU 394
C
 LYS 122LEU 394
D
 GLY 121LEU 394
E
 GLY 121LEU 394
F
 LEU 123LEU 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 99 helices in PDB entry 3GLS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
124 134Right-handed alpha
Helix 2
2
A
146 149Right-handed 310
Helix 3
3
A
162 169Right-handed alpha
Helix 4
4
A
175 180Right-handed 310
Helix 5
5
A
181 188Right-handed alpha
Helix 6
6
A
189 200Right-handed alpha
Helix 7
7
A
207 219Right-handed alpha
Helix 8
8
A
232 238Right-handed alpha
Helix 9
9
A
240 242Right-handed 310
Helix 10
10
A
268 274Right-handed alpha
Helix 11
11
A
299 303Right-handed 310
Helix 12
12
A
304 312Right-handed alpha
Helix 13
13
A
327 333Right-handed 310
Helix 14
14
A
348 354Right-handed alpha
Helix 15
15
A
365 378Right-handed alpha
Helix 16
16
A
379 394Right-handed alpha
Helix 17
17
B
124 134Right-handed alpha
Helix 18
18
B
146 153Right-handed 310
Helix 19
19
B
162 170Right-handed alpha
Helix 20
20
B
175 180Right-handed 310
Helix 21
21
B
181 186Right-handed alpha
Helix 22
22
B
189 200Right-handed alpha
Helix 23
23
B
207 219Right-handed alpha
Helix 24
24
B
232 237Right-handed alpha
Helix 25
25
B
240 242Right-handed 310
Helix 26
26
B
265 274Right-handed alpha
Helix 27
27
B
299 303Right-handed 310
Helix 28
28
B
304 309Right-handed alpha
Helix 29
29
B
327 333Right-handed 310
Helix 30
30
B
349 354Right-handed alpha
Helix 31
31
B
365 378Right-handed alpha
Helix 32
32
B
379 394Right-handed alpha
Helix 33
33
C
124 134Right-handed alpha
Helix 34
34
C
146 153Right-handed 310
Helix 35
35
C
162 171Right-handed alpha
Helix 36
36
C
175 180Right-handed 310
Helix 37
37
C
181 188Right-handed alpha
Helix 38
38
C
189 200Right-handed alpha
Helix 39
39
C
207 219Right-handed alpha
Helix 40
40
C
232 237Right-handed alpha
Helix 41
41
C
240 242Right-handed 310
Helix 42
42
C
268 275Right-handed alpha
Helix 43
43
C
299 303Right-handed 310
Helix 44
44
C
304 312Right-handed alpha
Helix 45
45
C
327 333Right-handed 310
Helix 46
46
C
348 354Right-handed alpha
Helix 47
47
C
365 378Right-handed alpha
Helix 48
48
C
379 394Right-handed alpha
Helix 49
49
D
124 134Right-handed alpha
Helix 50
50
D
146 149Right-handed 310
Helix 51
51
D
162 170Right-handed alpha
Helix 52
52
D
175 180Right-handed 310
Helix 53
53
D
181 188Right-handed alpha
Helix 54
54
D
189 200Right-handed alpha
Helix 55
55
D
207 219Right-handed alpha
Helix 56
56
D
232 237Right-handed alpha
Helix 57
57
D
240 242Right-handed 310
Helix 58
58
D
265 275Right-handed alpha
Helix 59
59
D
299 303Right-handed 310
Helix 60
60
D
304 309Right-handed alpha
Helix 61
61
D
310 312Right-handed 310
Helix 62
62
D
327 333Right-handed 310
Helix 63
63
D
349 354Right-handed alpha
Helix 64
64
D
365 377Right-handed alpha
Helix 65
65
D
379 393Right-handed alpha
Helix 66
66
E
124 134Right-handed alpha
Helix 67
67
E
146 153Right-handed 310
Helix 68
68
E
162 170Right-handed alpha
Helix 69
69
E
176 180Right-handed 310
Helix 70
70
E
181 186Right-handed alpha
Helix 71
71
E
189 200Right-handed alpha
Helix 72
72
E
207 219Right-handed alpha
Helix 73
73
E
232 237Right-handed alpha
Helix 74
74
E
240 242Right-handed 310
Helix 75
75
E
265 274Right-handed alpha
Helix 76
76
E
299 303Right-handed 310
Helix 77
77
E
304 309Right-handed alpha
Helix 78
78
E
310 312Right-handed 310
Helix 79
79
E
327 333Right-handed 310
Helix 80
80
E
348 354Right-handed alpha
Helix 81
81
E
365 378Right-handed alpha
Helix 82
82
E
379 394Right-handed alpha
Helix 83
83
F
124 134Right-handed alpha
Helix 84
84
F
146 153Right-handed 310
Helix 85
85
F
162 170Right-handed alpha
Helix 86
86
F
175 180Right-handed 310
Helix 87
87
F
181 186Right-handed alpha
Helix 88
88
F
189 200Right-handed alpha
Helix 89
89
F
207 219Right-handed alpha
Helix 90
90
F
232 237Right-handed alpha
Helix 91
91
F
240 242Right-handed 310
Helix 92
92
F
265 274Right-handed alpha
Helix 93
93
F
299 303Right-handed 310
Helix 94
94
F
304 309Right-handed alpha
Helix 95
95
F
310 312Right-handed 310
Helix 96
96
F
327 333Right-handed 310
Helix 97
97
F
349 354Right-handed alpha
Helix 98
98
F
365 378Right-handed alpha
Helix 99
99
F
381 392Right-handed alpha
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There are 12 sheets in PDB entry 3GLS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
222 227parallel
Strand 3
A
140 144parallel
Strand 4
A
314 318parallel
Strand 5
A
340 344parallel
Strand 6
A
359 363parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
287 291anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
222 227parallel
Strand 3
B
140 144parallel
Strand 4
B
314 318parallel
Strand 5
B
340 343parallel
Strand 6
B
359 361parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
249 256anti-parallel
Strand 3
B
287 291anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 246first strand
Strand 2
C
222 227parallel
Strand 3
C
140 144parallel
Strand 4
C
314 318parallel
Strand 5
C
340 344parallel
Strand 6
C
359 363parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 264first strand
Strand 2
C
249 256anti-parallel
Strand 3
C
287 291anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
244 246first strand
Strand 2
D
222 227parallel
Strand 3
D
140 144parallel
Strand 4
D
314 318parallel
Strand 5
D
340 344parallel
Strand 6
D
359 363parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
262 264first strand
Strand 2
D
249 256anti-parallel
Strand 3
D
287 291anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
244 246first strand
Strand 2
E
222 227parallel
Strand 3
E
140 144parallel
Strand 4
E
314 318parallel
Strand 5
E
340 344parallel
Strand 6
E
359 363parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
262 264first strand
Strand 2
E
249 256anti-parallel
Strand 3
E
287 291anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
244 246first strand
Strand 2
F
222 227parallel
Strand 3
F
140 144parallel
Strand 4
F
314 318parallel
Strand 5
F
340 344parallel
Strand 6
F
360 363parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
262 264first strand
Strand 2
F
249 256anti-parallel
Strand 3
F
287 291anti-parallel
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