Analysis of interatomic Contacts of Structural Units in PDB entry:
3GLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GLY entry

There is 1 chain in PDB entry 3GLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3GLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
1 21Right-handed alpha
Helix 2
H2
A
53 68Right-handed alpha
Helix 3
H3
A
72 90Right-handed alpha
Helix 4
H4
A
126 145Right-handed alpha
Helix 5
H5
A
148 169Right-handed alpha
Helix 6
H6
A
186 206Right-handed alpha
Helix 7
H7
A
211 227Right-handed alpha
Helix 8
H8
A
246 255Right-handed alpha
Helix 9
H9
A
272 287Right-handed alpha
Helix 10
H10
A
318 338Right-handed alpha
Helix 11
H11
A
345 354Right-handed alpha
Helix 12
H12
A
368 391Right-handed alpha
Helix 13
H13
A
416 430Right-handed alpha
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There are 9 sheets in PDB entry 3GLY. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6, S7, S8, S9,

There are 2 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
35 38anti-parallel
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There are 3 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
107 110anti-parallel
Strand 3
A
113 116anti-parallel
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There are 2 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
96 97anti-parallel
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There are 2 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
181 183anti-parallel
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There are 2 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
235 237anti-parallel
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There are 2 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
267 268anti-parallel
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There are 2 strands in S7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 344first strand
Strand 2
A
360 365anti-parallel
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There are 2 strands in S8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
396 397anti-parallel
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There are 2 strands in S9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 403first strand
Strand 2
A
407 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il