Analysis of interatomic Contacts of Structural Units in PDB entry:
3GNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GNR entry

There is 1 chain in PDB entry 3GNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11THR 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3GNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
28 33Right-handed alpha
Helix 3
3
A
44 51Right-handed alpha
Helix 4
4
A
67 81Right-handed alpha
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
105 122Right-handed alpha
Helix 7
7
A
136 144Right-handed alpha
Helix 8
8
A
145 148Right-handed 310
Helix 9
9
A
149 167Right-handed alpha
Helix 10
10
A
178 188Right-handed alpha
Helix 11
11
A
212 236Right-handed alpha
Helix 12
12
A
236 241Right-handed alpha
Helix 13
13
A
259 274Right-handed alpha
Helix 14
14
A
274 284Right-handed alpha
Helix 15
15
A
287 295Right-handed alpha
Helix 16
16
A
296 298Right-handed 310
Helix 17
17
A
302 310Right-handed alpha
Helix 18
18
A
340 345Right-handed alpha
Helix 19
19
A
371 386Right-handed alpha
Helix 20
20
A
406 411Right-handed alpha
Helix 21
21
A
413 433Right-handed alpha
Helix 22
22
A
451 456Right-handed 310
Helix 23
23
A
476 487Right-handed alpha
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There are 5 sheets in PDB entry 3GNR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
86 90parallel
Strand 3
A
125 131parallel
Strand 4
A
172 177parallel
Strand 5
A
243 249parallel
Strand 6
A
315 319parallel
Strand 7
A
390 395parallel
Strand 8
A
438 444parallel
Strand 9
A
22 26parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
323 328parallel
Strand 3
A
347 350anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
356 357anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
458 459anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 465first strand
Strand 2
A
473 475anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il