Analysis of interatomic Contacts of Structural Units in PDB entry:
3GPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GPC entry

There are 2 chains in PDB entry 3GPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36LYS 569
B
 TRP 35LYS 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 3GPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 50Right-handed alpha
Helix 2
2
A
50 60Right-handed alpha
Helix 3
3
A
83 99Right-handed alpha
Helix 4
4
A
116 130Right-handed alpha
Helix 5
5
A
141 153Right-handed alpha
Helix 6
6
A
163 171Right-handed alpha
Helix 7
7
A
172 174Right-handed 310
Helix 8
8
A
194 201Right-handed alpha
Helix 9
9
A
235 246Right-handed alpha
Helix 10
10
A
265 273Right-handed alpha
Helix 11
11
A
273 280Right-handed alpha
Helix 12
12
A
292 303Right-handed alpha
Helix 13
13
A
311 320Right-handed alpha
Helix 14
14
A
321 326Right-handed 310
Helix 15
15
A
342 354Right-handed alpha
Helix 16
16
A
429 436Right-handed alpha
Helix 17
17
A
463 465Right-handed 310
Helix 18
18
A
474 485Right-handed alpha
Helix 19
19
A
512 517Right-handed alpha
Helix 20
20
A
519 533Right-handed alpha
Helix 21
21
A
536 540Right-handed 310
Helix 22
22
A
559 568Right-handed alpha
Helix 23
23
B
45 50Right-handed alpha
Helix 24
24
B
50 60Right-handed alpha
Helix 25
25
B
83 99Right-handed alpha
Helix 26
26
B
116 130Right-handed alpha
Helix 27
27
B
141 153Right-handed alpha
Helix 28
28
B
163 171Right-handed alpha
Helix 29
29
B
172 174Right-handed 310
Helix 30
30
B
194 201Right-handed alpha
Helix 31
31
B
235 246Right-handed alpha
Helix 32
32
B
265 272Right-handed alpha
Helix 33
33
B
273 279Right-handed alpha
Helix 34
34
B
292 303Right-handed alpha
Helix 35
35
B
311 320Right-handed alpha
Helix 36
36
B
342 354Right-handed alpha
Helix 37
37
B
429 435Right-handed alpha
Helix 38
38
B
463 465Right-handed 310
Helix 39
39
B
474 484Right-handed alpha
Helix 40
40
B
513 518Right-handed 310
Helix 41
41
B
519 535Right-handed alpha
Helix 42
42
B
536 540Right-handed 310
Helix 43
43
B
559 568Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 3GPC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
282 286parallel
Strand 4
A
256 259parallel
Strand 5
A
307 310parallel
Strand 6
A
333 336parallel
Strand 7
A
358 363parallel
Strand 8
A
367 371anti-parallel
Strand 9
A
385 386anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
108 112parallel
Strand 3
A
156 160parallel
Strand 4
A
179 183parallel
Strand 5
A
192 193parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 220first strand
Strand 2
A
230 234anti-parallel
Strand 3
A
425 426anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
441 450anti-parallel
Strand 4
A
437 438anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
441 450anti-parallel
Strand 4
A
456 461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
471 473anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 498first strand
Strand 2
A
502 511anti-parallel
Strand 3
A
543 547parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
67 72anti-parallel
Strand 3
B
282 286parallel
Strand 4
B
256 259parallel
Strand 5
B
307 309parallel
Strand 6
B
333 336parallel
Strand 7
B
357 363parallel
Strand 8
B
367 371anti-parallel
Strand 9
B
385 386anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 135first strand
Strand 2
B
108 112parallel
Strand 3
B
156 159parallel
Strand 4
B
179 182parallel
Strand 5
B
192 193parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 220first strand
Strand 2
B
230 234anti-parallel
Strand 3
B
425 426anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 395first strand
Strand 2
B
408 413anti-parallel
Strand 3
B
441 450anti-parallel
Strand 4
B
437 438anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 395first strand
Strand 2
B
408 413anti-parallel
Strand 3
B
441 450anti-parallel
Strand 4
B
456 461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 468first strand
Strand 2
B
471 473anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 498first strand
Strand 2
B
502 511anti-parallel
Strand 3
B
543 546parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il