Analysis of interatomic Contacts of Structural Units in PDB entry:
3GQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GQL entry

There are 3 chains in PDB entry 3GQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 463ASP 774
B
TYR 463GLU 765
C
TYR 463TYR 766
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3GQL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
474 476Right-handed 310
Helix 2
2
A
521 539Right-handed alpha
Helix 3
3
A
568 575Right-handed alpha
Helix 4
4
A
596 617Right-handed alpha
Helix 5
5
A
625 627Right-handed 310
Helix 6
6
A
662 667Right-handed 310
Helix 7
7
A
668 675Right-handed alpha
Helix 8
8
A
678 694Right-handed alpha
Helix 9
9
A
705 716Right-handed alpha
Helix 10
10
A
726 737Right-handed alpha
Helix 11
11
A
740 744Right-handed 310
Helix 12
12
A
746 760Right-handed alpha
Helix 13
13
B
474 476Right-handed 310
Helix 14
14
B
521 539Right-handed alpha
Helix 15
15
B
568 575Right-handed alpha
Helix 16
16
B
597 617Right-handed alpha
Helix 17
17
B
625 627Right-handed 310
Helix 18
18
B
668 675Right-handed alpha
Helix 19
19
B
678 694Right-handed alpha
Helix 20
20
B
705 715Right-handed alpha
Helix 21
21
B
726 737Right-handed alpha
Helix 22
22
B
740 744Right-handed 310
Helix 23
23
B
746 760Right-handed alpha
Helix 24
24
C
474 476Right-handed 310
Helix 25
25
C
521 539Right-handed alpha
Helix 26
26
C
568 575Right-handed alpha
Helix 27
27
C
596 617Right-handed alpha
Helix 28
28
C
625 627Right-handed 310
Helix 29
29
C
669 674Right-handed alpha
Helix 30
30
C
679 694Right-handed alpha
Helix 31
31
C
705 715Right-handed alpha
Helix 32
32
C
726 737Right-handed alpha
Helix 33
33
C
740 744Right-handed 310
Helix 34
34
C
746 761Right-handed alpha
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There are 6 sheets in PDB entry 3GQL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
478 485first strand
Strand 2
A
491 498anti-parallel
Strand 3
A
508 515anti-parallel
Strand 4
A
558 562anti-parallel
Strand 5
A
547 551anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
629 631first strand
Strand 2
A
637 639anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
478 486first strand
Strand 2
B
491 498anti-parallel
Strand 3
B
508 515anti-parallel
Strand 4
B
558 562anti-parallel
Strand 5
B
547 551anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
629 631first strand
Strand 2
B
637 639anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
478 486first strand
Strand 2
C
491 498anti-parallel
Strand 3
C
508 515anti-parallel
Strand 4
C
558 562anti-parallel
Strand 5
C
547 551anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
629 631first strand
Strand 2
C
637 639anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il