Analysis of interatomic Contacts of Structural Units in PDB entry:
3GQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GQY entry

There are 4 chains in PDB entry 3GQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14PRO 531
B
 GLN 14PRO 531
C
 GLN 14PRO 531
D
 GLN 14PRO 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 92 helices in PDB entry 3GQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 22Right-handed alpha
Helix 2
2
A
25 32Right-handed alpha
Helix 3
3
A
57 68Right-handed alpha
Helix 4
4
A
80 97Right-handed alpha
Helix 5
5
A
123 127Right-handed 310
Helix 6
6
A
145 149Right-handed 310
Helix 7
7
A
163 168Right-handed alpha
Helix 8
8
A
222 235Right-handed alpha
Helix 9
9
A
247 259Right-handed alpha
Helix 10
10
A
273 279Right-handed alpha
Helix 11
11
A
279 287Right-handed alpha
Helix 12
12
A
294 301Right-handed alpha
Helix 13
13
A
302 304Right-handed 310
Helix 14
14
A
305 321Right-handed alpha
Helix 15
15
A
331 336Right-handed 310
Helix 16
16
A
341 355Right-handed alpha
Helix 17
17
A
362 367Right-handed alpha
Helix 18
18
A
370 388Right-handed alpha
Helix 19
19
A
390 402Right-handed alpha
Helix 20
20
A
407 423Right-handed alpha
Helix 21
21
A
435 443Right-handed alpha
Helix 22
22
A
456 463Right-handed alpha
Helix 23
23
A
464 466Right-handed 310
Helix 24
24
A
481 500Right-handed alpha
Helix 25
25
B
17 22Right-handed alpha
Helix 26
26
B
25 32Right-handed alpha
Helix 27
27
B
57 68Right-handed alpha
Helix 28
28
B
80 97Right-handed alpha
Helix 29
29
B
145 149Right-handed 310
Helix 30
30
B
163 168Right-handed alpha
Helix 31
31
B
222 235Right-handed alpha
Helix 32
32
B
247 259Right-handed alpha
Helix 33
33
B
273 279Right-handed alpha
Helix 34
34
B
279 287Right-handed alpha
Helix 35
35
B
294 301Right-handed alpha
Helix 36
36
B
302 304Right-handed 310
Helix 37
37
B
305 321Right-handed alpha
Helix 38
38
B
331 336Right-handed 310
Helix 39
39
B
341 355Right-handed alpha
Helix 40
40
B
362 367Right-handed alpha
Helix 41
41
B
370 388Right-handed alpha
Helix 42
42
B
390 401Right-handed alpha
Helix 43
43
B
407 423Right-handed alpha
Helix 44
44
B
435 443Right-handed alpha
Helix 45
45
B
456 463Right-handed alpha
Helix 46
46
B
464 466Right-handed 310
Helix 47
47
B
481 500Right-handed alpha
Helix 48
48
C
17 22Right-handed alpha
Helix 49
49
C
25 33Right-handed alpha
Helix 50
50
C
57 68Right-handed alpha
Helix 51
51
C
80 97Right-handed alpha
Helix 52
52
C
163 168Right-handed alpha
Helix 53
53
C
222 235Right-handed alpha
Helix 54
54
C
247 259Right-handed alpha
Helix 55
55
C
273 279Right-handed alpha
Helix 56
56
C
279 287Right-handed alpha
Helix 57
57
C
294 301Right-handed alpha
Helix 58
58
C
302 304Right-handed 310
Helix 59
59
C
305 321Right-handed alpha
Helix 60
60
C
331 336Right-handed 310
Helix 61
61
C
341 355Right-handed alpha
Helix 62
62
C
362 367Right-handed alpha
Helix 63
63
C
370 388Right-handed alpha
Helix 64
64
C
390 402Right-handed alpha
Helix 65
65
C
407 423Right-handed alpha
Helix 66
66
C
435 443Right-handed alpha
Helix 67
67
C
456 463Right-handed alpha
Helix 68
68
C
464 466Right-handed 310
Helix 69
69
C
481 500Right-handed alpha
Helix 70
70
D
17 22Right-handed alpha
Helix 71
71
D
25 33Right-handed alpha
Helix 72
72
D
57 68Right-handed alpha
Helix 73
73
D
80 97Right-handed alpha
Helix 74
74
D
145 149Right-handed 310
Helix 75
75
D
163 168Right-handed alpha
Helix 76
76
D
222 235Right-handed alpha
Helix 77
77
D
247 259Right-handed alpha
Helix 78
78
D
273 279Right-handed alpha
Helix 79
79
D
279 287Right-handed alpha
Helix 80
80
D
294 301Right-handed alpha
Helix 81
81
D
302 304Right-handed 310
Helix 82
82
D
305 321Right-handed alpha
Helix 83
83
D
331 336Right-handed 310
Helix 84
84
D
341 355Right-handed alpha
Helix 85
85
D
362 367Right-handed alpha
Helix 86
86
D
370 388Right-handed alpha
Helix 87
87
D
390 401Right-handed alpha
Helix 88
88
D
407 423Right-handed alpha
Helix 89
89
D
435 443Right-handed alpha
Helix 90
90
D
456 463Right-handed alpha
Helix 91
91
D
464 466Right-handed 310
Helix 92
92
D
481 500Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3GQY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
71 75parallel
Strand 3
A
109 113parallel
Strand 4
A
239 242parallel
Strand 5
A
266 271parallel
Strand 6
A
289 293parallel
Strand 7
A
324 327parallel
Strand 8
A
358 361parallel
Strand 9
A
46 50parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
201 203anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
139 143parallel
Strand 3
A
192 199anti-parallel
Strand 4
A
181 184anti-parallel
Strand 5
A
173 176anti-parallel
Strand 6
A
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 473first strand
Strand 2
A
450 454parallel
Strand 3
A
428 431parallel
Strand 4
A
508 514parallel
Strand 5
A
522 529anti-parallel
Strand 6
C
524 529anti-parallel
Strand 7
C
508 513anti-parallel
Strand 8
C
428 431parallel
Strand 9
C
450 454parallel
Strand 10
C
469 473parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
71 75parallel
Strand 3
B
109 113parallel
Strand 4
B
239 242parallel
Strand 5
B
266 271parallel
Strand 6
B
289 293parallel
Strand 7
B
324 327parallel
Strand 8
B
358 361parallel
Strand 9
B
46 50parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
139 143parallel
Strand 3
B
192 199anti-parallel
Strand 4
B
181 184anti-parallel
Strand 5
B
173 176anti-parallel
Strand 6
B
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
469 473first strand
Strand 2
B
450 454parallel
Strand 3
B
428 431parallel
Strand 4
B
508 514parallel
Strand 5
B
522 529anti-parallel
Strand 6
D
522 529anti-parallel
Strand 7
D
508 514anti-parallel
Strand 8
D
428 431parallel
Strand 9
D
450 454parallel
Strand 10
D
469 473parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 50first strand
Strand 2
C
71 75parallel
Strand 3
C
109 113parallel
Strand 4
C
239 242parallel
Strand 5
C
266 271parallel
Strand 6
C
289 293parallel
Strand 7
C
324 327parallel
Strand 8
C
358 361parallel
Strand 9
C
46 50parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 134first strand
Strand 2
C
201 203anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 158first strand
Strand 2
C
139 143parallel
Strand 3
C
192 199anti-parallel
Strand 4
C
181 188anti-parallel
Strand 5
C
173 176anti-parallel
Strand 6
C
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 50first strand
Strand 2
D
71 75parallel
Strand 3
D
109 113parallel
Strand 4
D
239 242parallel
Strand 5
D
266 271parallel
Strand 6
D
289 293parallel
Strand 7
D
324 327parallel
Strand 8
D
358 361parallel
Strand 9
D
46 50parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
156 158first strand
Strand 2
D
139 143parallel
Strand 3
D
192 199anti-parallel
Strand 4
D
181 187anti-parallel
Strand 5
D
173 176anti-parallel
Strand 6
D
209 210anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il