Analysis of interatomic Contacts of Structural Units in PDB entry:
3GRT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GRT entry

There is 1 chain in PDB entry 3GRT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 18ARG 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3GRT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
H2
A
56 86Right-handed alpha
Helix 2
H3
A
96 122Right-handed alpha
Helix 3
H4
A
170 174Right-handed 310
Helix 4
H5
A
177 183Right-handed 310
Helix 5
H6
A
196 209Right-handed alpha
Helix 6
H7
A
227 242Right-handed alpha
Helix 7
H8
A
299 304Right-handed 310
Helix 8
H9
A
330 334Right-handed 310
Helix 9
H10
A
338 354Right-handed alpha
Helix 10
H11
A
383 392Right-handed alpha
Helix 11
H12
A
405 409Right-handed 310
Helix 12
H13
A
444 453Right-handed alpha
Helix 13
H14
A
456 462Right-handed alpha
Helix 14
H15
A
470 476Right-handed 310
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There are 6 sheets in PDB entry 3GRT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
45 50first strand
Strand 2
A
22 27parallel
Strand 3
A
151 155parallel
Strand 4
A
325 329parallel
Strand 5
A
319 323anti-parallel
Strand 6
A
311 314anti-parallel
Strand 7
A
306 308anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 21first strand
Strand 2
A
145 148parallel
Strand 3
A
139 142anti-parallel
Strand 4
A
131 133anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 175first strand
Strand 2
A
283 288parallel
Strand 3
A
188 194parallel
Strand 4
A
212 217parallel
Strand 5
A
244 249parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 169first strand
Strand 2
A
248 257parallel
Strand 3
A
260 268anti-parallel
Strand 4
A
275 282anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
369 371first strand
Strand 2
A
376 382anti-parallel
Strand 3
A
428 437anti-parallel
Strand 4
A
417 425anti-parallel
Strand 5
A
395 403anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
157 161first strand
Strand 2
A
290 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il