Analysis of interatomic Contacts of Structural Units in PDB entry:
3GTQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GTQ entry

There are 12 chains in PDB entry 3GTQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 3ILE 1445
B
ASP 20PHE 1224
C
GLU 3ASP 268
E
ASP 2MET 215
F
LYS 72LEU 155
H
SER 2ARG 146
I
THR 2GLN 120
J
MET 1PRO 65
K
MET 1LEU 114
L
ALA 25ARG 70
R
A 1 G 11
T
C 17 C 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are124 helices in PDB entry 3GTQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
23 28Right-handed alpha
Helix 2
2
A
95 104Right-handed alpha
Helix 3
3
A
130 139Right-handed alpha
Helix 4
4
A
140 142Right-handed 310
Helix 5
5
A
203 212Right-handed alpha
Helix 6
6
A
215 221Right-handed alpha
Helix 7
7
A
243 247Right-handed 310
Helix 8
8
A
261 274Right-handed alpha
Helix 9
9
A
276 281Right-handed alpha
Helix 10
10
A
285 289Right-handed 310
Helix 11
11
A
290 305Right-handed alpha
Helix 12
12
A
334 340Right-handed alpha
Helix 13
13
A
368 374Right-handed alpha
Helix 14
14
A
384 395Right-handed alpha
Helix 15
15
A
474 479Right-handed alpha
Helix 16
16
A
494 503Right-handed alpha
Helix 17
17
A
506 510Right-handed 310
Helix 18
18
A
525 534Right-handed alpha
Helix 19
19
A
542 553Right-handed alpha
Helix 20
20
A
574 582Right-handed alpha
Helix 21
21
A
618 623Right-handed alpha
Helix 22
22
A
628 637Right-handed alpha
Helix 23
23
A
639 660Right-handed alpha
Helix 24
24
A
665 669Right-handed 310
Helix 25
25
A
672 685Right-handed alpha
Helix 26
26
A
685 699Right-handed alpha
Helix 27
27
A
709 737Right-handed alpha
Helix 28
28
A
741 750Right-handed alpha
Helix 29
29
A
754 763Right-handed alpha
Helix 30
30
A
809 820Right-handed alpha
Helix 31
31
A
821 828Right-handed alpha
Helix 32
32
A
833 846Right-handed alpha
Helix 33
33
A
867 871Right-handed 310
Helix 34
34
A
874 876Right-handed 310
Helix 35
35
A
889 895Right-handed alpha
Helix 36
36
A
903 907Right-handed 310
Helix 37
37
A
915 920Right-handed alpha
Helix 38
38
A
927 947Right-handed alpha
Helix 39
39
A
959 966Right-handed alpha
Helix 40
40
A
984 996Right-handed alpha
Helix 41
41
A
1004 1014Right-handed alpha
Helix 42
42
A
1015 1026Right-handed alpha
Helix 43
43
A
1038 1057Right-handed alpha
Helix 44
44
A
1063 1078Right-handed alpha
Helix 45
45
A
1096 1107Right-handed alpha
Helix 46
46
A
1127 1139Right-handed alpha
Helix 47
47
A
1163 1166Right-handed 310
Helix 48
48
A
1167 1172Right-handed alpha
Helix 49
49
A
1200 1205Right-handed alpha
Helix 50
50
A
1208 1221Right-handed alpha
Helix 51
51
A
1258 1269Right-handed alpha
Helix 52
52
A
1333 1340Right-handed alpha
Helix 53
53
A
1340 1358Right-handed alpha
Helix 54
54
A
1367 1378Right-handed alpha
Helix 55
55
A
1388 1392Right-handed 310
Helix 56
56
A
1395 1401Right-handed alpha
Helix 57
57
A
1404 1415Right-handed alpha
Helix 58
58
A
1424 1430Right-handed alpha
Helix 59
59
A
1436 1440Right-handed 310
Helix 60
60
B
26 28Right-handed 310
Helix 61
61
B
29 40Right-handed alpha
Helix 62
62
B
44 57Right-handed alpha
Helix 63
63
B
57 64Right-handed alpha
Helix 64
64
B
113 120Right-handed alpha
Helix 65
65
B
179 184Right-handed 310
Helix 66
66
B
185 192Right-handed alpha
Helix 67
67
B
282 288Right-handed alpha
Helix 68
68
B
295 302Right-handed alpha
Helix 69
69
B
307 322Right-handed alpha
Helix 70
70
B
326 333Right-handed alpha
Helix 71
71
B
347 359Right-handed alpha
Helix 72
72
B
370 390Right-handed alpha
Helix 73
73
B
400 402Right-handed 310
Helix 74
74
B
408 434Right-handed alpha
Helix 75
75
B
450 464Right-handed alpha
Helix 76
76
B
487 495Right-handed alpha
Helix 77
77
B
515 519Right-handed 310
Helix 78
78
B
551 560Right-handed alpha
Helix 79
79
B
592 606Right-handed alpha
Helix 80
80
B
656 667Right-handed alpha
Helix 81
81
B
680 687Right-handed alpha
Helix 82
82
B
695 699Right-handed alpha
Helix 83
83
B
744 749Right-handed 310
Helix 84
84
B
752 756Right-handed 310
Helix 85
85
B
758 762Right-handed 310
Helix 86
86
B
763 774Right-handed alpha
Helix 87
87
B
775 777Right-handed 310
Helix 88
88
B
782 787Right-handed 310
Helix 89
89
B
813 817Right-handed 310
Helix 90
90
B
843 848Right-handed alpha
Helix 91
91
B
1022 1039Right-handed alpha
Helix 92
92
B
1051 1059Right-handed alpha
Helix 93
93
B
1098 1102Right-handed 310
Helix 94
94
B
1131 1141Right-handed alpha
Helix 95
95
B
1143 1151Right-handed alpha
Helix 96
96
B
1197 1210Right-handed alpha
Helix 97
97
C
26 40Right-handed alpha
Helix 98
98
C
59 70Right-handed alpha
Helix 99
99
C
76 80Right-handed 310
Helix 100
100
C
163 171Right-handed 310
Helix 101
101
C
204 208Right-handed 310
Helix 102
102
C
239 264Right-handed alpha
Helix 103
103
E
6 27Right-handed alpha
Helix 104
104
E
31 36Right-handed alpha
Helix 105
105
E
38 46Right-handed alpha
Helix 106
106
E
54 59Right-handed 310
Helix 107
107
E
65 72Right-handed alpha
Helix 108
108
E
92 104Right-handed alpha
Helix 109
109
E
120 124Right-handed 310
Helix 110
110
E
137 141Right-handed 310
Helix 111
111
E
143 147Right-handed 310
Helix 112
112
E
162 168Right-handed alpha
Helix 113
113
E
171 175Right-handed 310
Helix 114
114
E
182 187Right-handed alpha
Helix 115
115
F
86 102Right-handed alpha
Helix 116
116
F
116 127Right-handed alpha
Helix 117
117
I
61 65Right-handed 310
Helix 118
118
J
16 27Right-handed alpha
Helix 119
119
J
31 39Right-handed alpha
Helix 120
120
J
44 53Right-handed alpha
Helix 121
121
J
56 62Right-handed alpha
Helix 122
122
K
39 41Right-handed 310
Helix 123
123
K
42 50Right-handed alpha
Helix 124
124
K
82 110Right-handed alpha
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There are 46 sheets in PDB entry 3GTQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1418 1419first strand
Strand 2
A
16 19anti-parallel
Strand 3
B
1214 1217anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
84 90first strand
Strand 2
A
236 239anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 176first strand
Strand 2
A
181 182anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
344 345first strand
Strand 2
B
1128 1129anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1104 1106first strand
Strand 2
A
348 355anti-parallel
Strand 3
A
486 490anti-parallel
Strand 4
A
441 445anti-parallel
Strand 5
A
455 463anti-parallel
Strand 6
A
363 367parallel
Strand 7
A
468 470anti-parallel
Strand 8
A
348 355parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
375 376first strand
Strand 2
A
434 435anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
405 406first strand
Strand 2
A
412 413anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 513first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
540 541first strand
Strand 2
A
572 573anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
588 589first strand
Strand 2
A
606 608anti-parallel
Strand 3
A
611 614anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
766 767first strand
Strand 2
A
799 800anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
849 850first strand
Strand 2
A
856 857anti-parallel
Strand 3
A
863 865anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
878 882first strand
Strand 2
A
953 957anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1282 1292first strand
Strand 2
A
1298 1308anti-parallel
Strand 3
A
1116 1118anti-parallel
Strand 4
A
1328 1329anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1141 1142first strand
Strand 2
A
1272 1274anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1237 1241first strand
Strand 2
A
1191 1197anti-parallel
Strand 3
A
1147 1154anti-parallel
Strand 4
I
44 45anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1442 1444first strand
Strand 2
F
133 138anti-parallel
Strand 3
F
142 147anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
91 97first strand
Strand 2
B
125 133anti-parallel
Strand 3
B
165 171anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
101 103first strand
Strand 2
B
109 111anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
203 205first strand
Strand 2
B
208 210anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
404 407first strand
Strand 2
B
214 218anti-parallel
Strand 3
B
497 499parallel
Strand 4
B
537 538anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
223 225first strand
Strand 2
B
234 240anti-parallel
Strand 3
B
254 259anti-parallel
Strand 4
B
269 272anti-parallel
Strand 5
B
280 281anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
544 545first strand
Strand 2
B
633 635anti-parallel
Strand 3
B
693 694anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
564 565first strand
Strand 2
B
586 590anti-parallel
Strand 3
B
578 582anti-parallel
Strand 4
B
623 627parallel
Strand 5
B
614 618anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
640 641first strand
Strand 2
B
650 651anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
703 704first strand
Strand 2
B
740 741parallel
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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
793 796first strand
Strand 2
B
853 856anti-parallel
Strand 3
B
968 972anti-parallel
Strand 4
B
946 949anti-parallel
Strand 5
B
904 906anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
804 805first strand
Strand 2
B
1042 1043parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
979 980first strand
Strand 2
B
988 994anti-parallel
Strand 3
B
839 842parallel
Strand 4
B
1010 1012anti-parallel
Strand 5
B
824 827parallel
Strand 6
B
1085 1089anti-parallel
Strand 7
B
1069 1070anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
859 861first strand
Strand 2
B
963 966anti-parallel
Strand 3
B
954 955anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
873 874first strand
Strand 2
B
914 917anti-parallel
Strand 3
B
934 936anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
910 912first strand
Strand 2
B
939 940anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1001 1002first strand
Strand 2
B
1072 1073anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1158 1163first strand
Strand 2
B
1191 1196anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
12 13first strand
Strand 2
C
17 19anti-parallel
Strand 3
C
231 233anti-parallel
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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
118 120first strand
Strand 2
C
97 104anti-parallel
Strand 3
C
152 162anti-parallel
Strand 4
C
43 54anti-parallel
Strand 5
L
67 68anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
111 114first strand
Strand 2
C
143 147anti-parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
61 62first strand
Strand 2
E
78 82anti-parallel
Strand 3
E
107 111parallel
Strand 4
E
131 135parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
87 88first strand
Strand 2
E
115 116parallel
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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
153 156first strand
Strand 2
E
195 201anti-parallel
Strand 3
E
207 214anti-parallel
Strand 4
E
177 178parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
7 11first strand
Strand 2
H
54 58anti-parallel
Strand 3
H
141 145anti-parallel
Strand 4
H
95 98anti-parallel
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There are 6 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
14 16first strand
Strand 2
H
23 29anti-parallel
Strand 3
H
37 43anti-parallel
Strand 4
H
121 127anti-parallel
Strand 5
H
111 118anti-parallel
Strand 6
H
100 108anti-parallel
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There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
18 19first strand
Strand 2
I
24 28anti-parallel
Strand 3
I
35 37anti-parallel
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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
100 102first strand
Strand 2
I
109 111anti-parallel
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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
30 36first strand
Strand 2
K
70 77anti-parallel
Strand 3
K
56 60anti-parallel
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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
29 30first strand
Strand 2
L
37 38anti-parallel
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