Analysis of interatomic Contacts of Structural Units in PDB entry:
3GUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GUT entry

There are 12 chains in PDB entry 3GUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 19ASP 291
B
GLY 339GLU 650
C
ALA 19ASP 291
D
GLY 339GLU 650
E
ALA 19ASP 291
F
GLY 339GLU 650
G
ALA 19ASP 291
H
GLY 339GLU 650
X
A 1 A 26
Y
T 1 C 26
I
A 1 A 26
J
T 1 C 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 3GUT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
126 136Right-handed alpha
Helix 2
2
A
240 242Right-handed 310
Helix 3
3
B
357 361Right-handed 310
Helix 4
4
B
446 461Right-handed alpha
Helix 5
5
B
464 469Right-handed alpha
Helix 6
6
B
470 474Right-handed 310
Helix 7
7
B
487 503Right-handed alpha
Helix 8
8
B
574 576Right-handed 310
Helix 9
9
C
125 136Right-handed alpha
Helix 10
10
C
240 247Right-handed 310
Helix 11
11
D
359 361Right-handed 310
Helix 12
12
D
446 461Right-handed alpha
Helix 13
13
D
464 469Right-handed alpha
Helix 14
14
D
470 474Right-handed 310
Helix 15
15
D
489 503Right-handed alpha
Helix 16
16
D
599 601Right-handed 310
Helix 17
17
E
126 136Right-handed alpha
Helix 18
18
E
220 224Right-handed 310
Helix 19
19
E
240 242Right-handed 310
Helix 20
20
E
274 278Right-handed 310
Helix 21
21
F
357 361Right-handed 310
Helix 22
22
F
443 445Right-handed 310
Helix 23
23
F
446 462Right-handed alpha
Helix 24
24
F
464 469Right-handed alpha
Helix 25
25
F
470 474Right-handed 310
Helix 26
26
F
487 502Right-handed alpha
Helix 27
27
F
503 505Right-handed 310
Helix 28
28
F
574 576Right-handed 310
Helix 29
29
G
122 124Right-handed 310
Helix 30
30
G
125 136Right-handed alpha
Helix 31
31
G
240 247Right-handed 310
Helix 32
32
G
274 278Right-handed 310
Helix 33
33
H
357 361Right-handed 310
Helix 34
34
H
446 461Right-handed alpha
Helix 35
35
H
464 469Right-handed alpha
Helix 36
36
H
470 474Right-handed 310
Helix 37
37
H
487 502Right-handed alpha
Helix 38
38
H
503 505Right-handed 310
Helix 39
39
H
542 546Right-handed 310
Helix 40
40
H
599 601Right-handed 310
Helix 41
41
H
605 607Right-handed 310
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There are 49 sheets in PDB entry 3GUT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 22first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
110 112anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
95 96first strand
Strand 2
A
99 103anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
156 166anti-parallel
Strand 5
A
178 179anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 174first strand
Strand 2
A
156 166anti-parallel
Strand 3
A
183 184anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
89 91first strand
Strand 2
A
117 119anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
196 199first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
249 253anti-parallel
Strand 4
A
244 245anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
203 205first strand
Strand 2
A
284 289parallel
Strand 3
A
266 272anti-parallel
Strand 4
A
226 230anti-parallel
Strand 5
A
233 236anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
341 346first strand
Strand 2
B
381 385anti-parallel
Strand 3
B
431 433anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
416 417first strand
Strand 2
B
420 424anti-parallel
Strand 3
B
392 398anti-parallel
Strand 4
B
509 519anti-parallel
Strand 5
B
525 538anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
410 413first strand
Strand 2
B
437 440anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
550 553first strand
Strand 2
B
565 570anti-parallel
Strand 3
B
608 612anti-parallel
Strand 4
B
603 604anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
557 559first strand
Strand 2
B
643 648parallel
Strand 3
B
625 633anti-parallel
Strand 4
B
578 585anti-parallel
Strand 5
B
591 595anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
20 25first strand
Strand 2
C
60 64anti-parallel
Strand 3
C
110 112anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
95 96first strand
Strand 2
C
99 103anti-parallel
Strand 3
C
71 77anti-parallel
Strand 4
C
156 166anti-parallel
Strand 5
C
178 179anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
172 174first strand
Strand 2
C
156 166anti-parallel
Strand 3
C
183 184anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
89 92first strand
Strand 2
C
116 119anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
196 199first strand
Strand 2
C
211 216anti-parallel
Strand 3
C
249 253anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
203 205first strand
Strand 2
C
284 289parallel
Strand 3
C
266 273anti-parallel
Strand 4
C
225 229anti-parallel
Strand 5
C
234 236anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
341 344first strand
Strand 2
D
382 385anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
351 353first strand
Strand 2
D
532 539parallel
Strand 3
D
509 519anti-parallel
Strand 4
D
392 398anti-parallel
Strand 5
D
420 424anti-parallel
Strand 6
D
416 417anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
351 353first strand
Strand 2
D
532 539parallel
Strand 3
D
509 519anti-parallel
Strand 4
D
525 528anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
356 357first strand
Strand 2
D
437 441parallel
Strand 3
D
410 413anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
550 553first strand
Strand 2
D
565 570anti-parallel
Strand 3
D
608 612anti-parallel
Strand 4
D
603 604anti-parallel
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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
557 559first strand
Strand 2
D
643 648parallel
Strand 3
D
625 632anti-parallel
Strand 4
D
579 585anti-parallel
Strand 5
D
591 595anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
20 22first strand
Strand 2
E
60 64anti-parallel
Strand 3
E
110 112anti-parallel
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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
95 96first strand
Strand 2
E
99 103anti-parallel
Strand 3
E
71 77anti-parallel
Strand 4
E
156 166anti-parallel
Strand 5
E
178 179anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
172 174first strand
Strand 2
E
156 166anti-parallel
Strand 3
E
183 184anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
89 91first strand
Strand 2
E
117 119anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
196 199first strand
Strand 2
E
211 216anti-parallel
Strand 3
E
249 253anti-parallel
Strand 4
E
244 245anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
203 205first strand
Strand 2
E
284 289parallel
Strand 3
E
266 273anti-parallel
Strand 4
E
225 230anti-parallel
Strand 5
E
233 236anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
342 346first strand
Strand 2
F
381 384anti-parallel
Strand 3
F
431 433anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
416 417first strand
Strand 2
F
420 424anti-parallel
Strand 3
F
392 398anti-parallel
Strand 4
F
509 519anti-parallel
Strand 5
F
525 528anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
416 417first strand
Strand 2
F
420 424anti-parallel
Strand 3
F
392 398anti-parallel
Strand 4
F
509 519anti-parallel
Strand 5
F
532 538anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
410 413first strand
Strand 2
F
437 440anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
550 553first strand
Strand 2
F
565 570anti-parallel
Strand 3
F
608 612anti-parallel
Strand 4
F
603 604anti-parallel
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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
557 559first strand
Strand 2
F
643 648parallel
Strand 3
F
625 633anti-parallel
Strand 4
F
578 585anti-parallel
Strand 5
F
591 595anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
20 25first strand
Strand 2
G
60 64anti-parallel
Strand 3
G
110 112anti-parallel
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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
95 96first strand
Strand 2
G
99 103anti-parallel
Strand 3
G
71 77anti-parallel
Strand 4
G
156 166anti-parallel
Strand 5
G
178 179anti-parallel
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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
172 174first strand
Strand 2
G
156 166anti-parallel
Strand 3
G
183 184anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
89 90first strand
Strand 2
G
118 119anti-parallel
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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
196 199first strand
Strand 2
G
211 216anti-parallel
Strand 3
G
249 253anti-parallel
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There are 5 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
203 205first strand
Strand 2
G
284 289parallel
Strand 3
G
266 273anti-parallel
Strand 4
G
225 230anti-parallel
Strand 5
G
233 236anti-parallel
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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
341 344first strand
Strand 2
H
382 385anti-parallel
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There are 6 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
351 353first strand
Strand 2
H
532 539parallel
Strand 3
H
509 519anti-parallel
Strand 4
H
392 398anti-parallel
Strand 5
H
420 424anti-parallel
Strand 6
H
416 417anti-parallel
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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
351 353first strand
Strand 2
H
532 539parallel
Strand 3
H
509 519anti-parallel
Strand 4
H
525 528anti-parallel
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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
410 413first strand
Strand 2
H
437 440anti-parallel
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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
550 553first strand
Strand 2
H
568 570anti-parallel
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There are 5 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
557 559first strand
Strand 2
H
643 648parallel
Strand 3
H
625 631anti-parallel
Strand 4
H
580 585anti-parallel
Strand 5
H
591 595anti-parallel
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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
565 566first strand
Strand 2
H
611 612anti-parallel
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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
603 604first strand
Strand 2
H
608 609anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il