Analysis of interatomic Contacts of Structural Units in PDB entry:
3GYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GYB entry

There are 2 chains in PDB entry 3GYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 62ARG 330
B
 THR 63ARG 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3GYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 77Right-handed 310
Helix 2
2
A
78 90Right-handed alpha
Helix 3
3
A
91 93Right-handed 310
Helix 4
4
A
109 116Right-handed alpha
Helix 5
5
A
159 174Right-handed alpha
Helix 6
6
A
186 203Right-handed alpha
Helix 7
7
A
217 232Right-handed alpha
Helix 8
8
A
242 257Right-handed alpha
Helix 9
9
A
272 277Right-handed alpha
Helix 10
10
A
288 305Right-handed alpha
Helix 11
11
B
75 77Right-handed 310
Helix 12
12
B
78 90Right-handed alpha
Helix 13
13
B
91 93Right-handed 310
Helix 14
14
B
109 116Right-handed alpha
Helix 15
15
B
159 174Right-handed alpha
Helix 16
16
B
186 203Right-handed alpha
Helix 17
17
B
217 232Right-handed alpha
Helix 18
18
B
242 257Right-handed alpha
Helix 19
19
B
272 277Right-handed alpha
Helix 20
20
B
288 304Right-handed alpha
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There are 5 sheets in PDB entry 3GYB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
65 70parallel
Strand 3
A
121 125parallel
Strand 4
A
140 143parallel
Strand 5
A
155 158parallel
Strand 6
A
316 317parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
179 182parallel
Strand 3
A
237 240parallel
Strand 4
A
265 269parallel
Strand 5
A
284 286parallel
Strand 6
A
320 322anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 99first strand
Strand 2
B
65 70parallel
Strand 3
B
121 125parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
316 317parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
179 182parallel
Strand 3
B
237 240parallel
Strand 4
B
265 269parallel
Strand 5
B
284 286parallel
Strand 6
B
320 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il