Analysis of interatomic Contacts of Structural Units in PDB entry:
3H11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H11 entry

There are 3 chains in PDB entry 3H11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 237THR 480
B
 ASP 208ASP 464
C
 ALA 700THR 703
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3H11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
265 275Right-handed alpha
Helix 2
2
A
285 298Right-handed alpha
Helix 3
3
A
299 305Right-handed 310
Helix 4
4
A
333 341Right-handed alpha
Helix 5
5
A
345 349Right-handed 310
Helix 6
6
A
411 413Right-handed 310
Helix 7
7
A
421 434Right-handed alpha
Helix 8
8
A
438 455Right-handed alpha
Helix 9
9
A
456 457Right-handed 310
Helix 10
10
A
458 461Right-handed 310
Helix 11
11
B
230 235Right-handed alpha
Helix 12
12
B
236 240Right-handed 310
Helix 13
13
B
247 262Right-handed alpha
Helix 14
14
B
273 287Right-handed alpha
Helix 15
15
B
318 323Right-handed alpha
Helix 16
16
B
324 326Right-handed 310
Helix 17
17
B
330 334Right-handed 310
Helix 18
18
B
405 418Right-handed alpha
Helix 19
19
B
419 421Right-handed 310
Helix 20
20
B
423 437Right-handed alpha
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There are 4 sheets in PDB entry 3H11. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 282first strand
Strand 2
A
252 258parallel
Strand 3
A
307 317parallel
Strand 4
A
320 321anti-parallel
Strand 5
A
331 332anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 282first strand
Strand 2
A
252 258parallel
Strand 3
A
307 317parallel
Strand 4
A
353 361parallel
Strand 5
A
401 409parallel
Strand 6
A
463 469anti-parallel
Strand 7
B
450 453anti-parallel
Strand 8
B
384 388anti-parallel
Strand 9
B
338 343parallel
Strand 10
B
295 300parallel
Strand 11
B
220 225parallel
Strand 12
B
265 270parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
307 309anti-parallel
Strand 3
B
315 317anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 404first strand
Strand 2
B
397 399anti-parallel
Strand 3
C
702 703anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il