Analysis of interatomic Contacts of Structural Units in PDB entry:
3H78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H78 entry

There are 2 chains in PDB entry 3H78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 329
B
 SER -6PRO 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3H78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed alpha
Helix 2
2
A
29 38Right-handed alpha
Helix 3
3
A
51 66Right-handed alpha
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
89 99Right-handed alpha
Helix 6
6
A
110 112Right-handed 310
Helix 7
7
A
113 128Right-handed alpha
Helix 8
8
A
143 146Right-handed 310
Helix 9
9
A
152 157Right-handed alpha
Helix 10
10
A
187 191Right-handed 310
Helix 11
11
A
207 213Right-handed alpha
Helix 12
12
A
221 244Right-handed alpha
Helix 13
13
A
247 251Right-handed 310
Helix 14
14
A
260 272Right-handed alpha
Helix 15
15
A
274 278Right-handed 310
Helix 16
16
A
281 286Right-handed alpha
Helix 17
17
A
288 290Right-handed 310
Helix 18
18
A
291 301Right-handed alpha
Helix 19
19
A
302 304Right-handed 310
Helix 20
20
B
19 24Right-handed alpha
Helix 21
21
B
29 38Right-handed alpha
Helix 22
22
B
51 66Right-handed alpha
Helix 23
23
B
69 73Right-handed 310
Helix 24
24
B
89 99Right-handed alpha
Helix 25
25
B
110 112Right-handed 310
Helix 26
26
B
113 128Right-handed alpha
Helix 27
27
B
143 146Right-handed 310
Helix 28
28
B
152 157Right-handed alpha
Helix 29
29
B
187 191Right-handed 310
Helix 30
30
B
207 213Right-handed alpha
Helix 31
31
B
221 244Right-handed alpha
Helix 32
32
B
247 251Right-handed 310
Helix 33
33
B
260 272Right-handed alpha
Helix 34
34
B
274 278Right-handed 310
Helix 35
35
B
281 286Right-handed alpha
Helix 36
36
B
288 290Right-handed 310
Helix 37
37
B
291 301Right-handed alpha
Helix 38
38
B
302 304Right-handed 310
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There are 7 sheets in PDB entry 3H78. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
161 169anti-parallel
Strand 3
A
133 141anti-parallel
Strand 4
A
75 79parallel
Strand 5
A
105 109parallel
Strand 6
B
105 109anti-parallel
Strand 7
B
75 79parallel
Strand 8
B
133 141parallel
Strand 9
B
161 169anti-parallel
Strand 10
B
4 11anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
41 44anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 185first strand
Strand 2
A
320 327anti-parallel
Strand 3
A
309 316anti-parallel
Strand 4
A
253 256parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
219 220anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
41 44anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 185first strand
Strand 2
B
320 327anti-parallel
Strand 3
B
309 316anti-parallel
Strand 4
B
253 256parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
219 220anti-parallel
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