Analysis of interatomic Contacts of Structural Units in PDB entry:
3HE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HE1 entry

There are 6 chains in PDB entry 3HE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2SER 168
B
 PRO 4ARG 167
C
 ALA 2SER 168
D
 PRO 4ARG 167
E
 ALA 2SER 168
F
 PRO 4ARG 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3HE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 28Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
77 88Right-handed alpha
Helix 4
4
B
23 28Right-handed alpha
Helix 5
5
B
29 31Right-handed 310
Helix 6
6
B
76 88Right-handed alpha
Helix 7
7
C
23 28Right-handed alpha
Helix 8
8
C
29 31Right-handed 310
Helix 9
9
C
77 88Right-handed alpha
Helix 10
10
D
23 28Right-handed alpha
Helix 11
11
D
29 31Right-handed 310
Helix 12
12
D
77 88Right-handed alpha
Helix 13
13
E
23 28Right-handed alpha
Helix 14
14
E
29 31Right-handed 310
Helix 15
15
E
77 88Right-handed alpha
Helix 16
16
F
23 28Right-handed alpha
Helix 17
17
F
29 31Right-handed 310
Helix 18
18
F
76 88Right-handed alpha
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There are 24 sheets in PDB entry 3HE1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
5 11anti-parallel
Strand 3
A
15 16anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
5 11anti-parallel
Strand 3
A
90 101anti-parallel
Strand 4
A
107 127anti-parallel
Strand 5
A
150 155anti-parallel
Strand 6
A
161 165anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
5 11anti-parallel
Strand 3
A
90 101anti-parallel
Strand 4
A
107 127anti-parallel
Strand 5
A
140 147anti-parallel
Strand 6
A
68 73anti-parallel
Strand 7
A
43 45anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
5 11anti-parallel
Strand 3
A
90 101anti-parallel
Strand 4
A
107 127anti-parallel
Strand 5
B
43 49anti-parallel
Strand 6
B
64 65anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
5 11anti-parallel
Strand 3
A
90 101anti-parallel
Strand 4
A
107 127anti-parallel
Strand 5
B
43 49anti-parallel
Strand 6
B
68 73anti-parallel
Strand 7
B
141 147anti-parallel
Strand 8
B
107 126anti-parallel
Strand 9
B
150 155anti-parallel
Strand 10
B
160 165anti-parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
5 11anti-parallel
Strand 3
A
90 101anti-parallel
Strand 4
A
107 127anti-parallel
Strand 5
B
43 49anti-parallel
Strand 6
B
68 73anti-parallel
Strand 7
B
141 147anti-parallel
Strand 8
B
107 126anti-parallel
Strand 9
B
91 101anti-parallel
Strand 10
B
5 11anti-parallel
Strand 11
B
15 16anti-parallel
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There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
5 11anti-parallel
Strand 3
A
90 101anti-parallel
Strand 4
A
107 127anti-parallel
Strand 5
B
43 49anti-parallel
Strand 6
B
68 73anti-parallel
Strand 7
B
141 147anti-parallel
Strand 8
B
107 126anti-parallel
Strand 9
B
91 101anti-parallel
Strand 10
B
5 11anti-parallel
Strand 11
B
39 41anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
64 65anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
5 11anti-parallel
Strand 3
C
39 41anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
5 11anti-parallel
Strand 3
C
90 101anti-parallel
Strand 4
C
107 127anti-parallel
Strand 5
C
150 155anti-parallel
Strand 6
C
161 165anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
5 11anti-parallel
Strand 3
C
90 101anti-parallel
Strand 4
C
107 127anti-parallel
Strand 5
C
140 147anti-parallel
Strand 6
C
68 73anti-parallel
Strand 7
C
43 49anti-parallel
Strand 8
C
64 65anti-parallel
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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
5 11anti-parallel
Strand 3
C
90 101anti-parallel
Strand 4
C
107 127anti-parallel
Strand 5
C
140 147anti-parallel
Strand 6
C
68 73anti-parallel
Strand 7
C
43 49anti-parallel
Strand 8
D
107 126anti-parallel
Strand 9
D
150 155anti-parallel
Strand 10
D
160 165anti-parallel
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There are 11 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
5 11anti-parallel
Strand 3
C
90 101anti-parallel
Strand 4
C
107 127anti-parallel
Strand 5
C
140 147anti-parallel
Strand 6
C
68 73anti-parallel
Strand 7
C
43 49anti-parallel
Strand 8
D
107 126anti-parallel
Strand 9
D
141 147anti-parallel
Strand 10
D
68 73anti-parallel
Strand 11
D
43 45anti-parallel
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There are 11 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
5 11anti-parallel
Strand 3
C
90 101anti-parallel
Strand 4
C
107 127anti-parallel
Strand 5
C
140 147anti-parallel
Strand 6
C
68 73anti-parallel
Strand 7
C
43 49anti-parallel
Strand 8
D
107 126anti-parallel
Strand 9
D
91 101anti-parallel
Strand 10
D
5 11anti-parallel
Strand 11
D
15 16anti-parallel
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There are 11 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 16first strand
Strand 2
C
5 11anti-parallel
Strand 3
C
90 101anti-parallel
Strand 4
C
107 127anti-parallel
Strand 5
C
140 147anti-parallel
Strand 6
C
68 73anti-parallel
Strand 7
C
43 49anti-parallel
Strand 8
D
107 126anti-parallel
Strand 9
D
91 101anti-parallel
Strand 10
D
5 11anti-parallel
Strand 11
D
39 40anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 49first strand
Strand 2
D
64 65anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
5 11anti-parallel
Strand 3
E
15 16anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
5 11anti-parallel
Strand 3
E
91 101anti-parallel
Strand 4
E
107 127anti-parallel
Strand 5
E
150 155anti-parallel
Strand 6
E
161 165anti-parallel
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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
5 11anti-parallel
Strand 3
E
91 101anti-parallel
Strand 4
E
107 127anti-parallel
Strand 5
E
140 147anti-parallel
Strand 6
E
68 73anti-parallel
Strand 7
E
43 45anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
5 11anti-parallel
Strand 3
E
91 101anti-parallel
Strand 4
E
107 127anti-parallel
Strand 5
F
43 49anti-parallel
Strand 6
F
64 65anti-parallel
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There are 10 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
5 11anti-parallel
Strand 3
E
91 101anti-parallel
Strand 4
E
107 127anti-parallel
Strand 5
F
43 49anti-parallel
Strand 6
F
68 73anti-parallel
Strand 7
F
141 147anti-parallel
Strand 8
F
107 126anti-parallel
Strand 9
F
150 155anti-parallel
Strand 10
F
160 165anti-parallel
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There are 11 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
5 11anti-parallel
Strand 3
E
91 101anti-parallel
Strand 4
E
107 127anti-parallel
Strand 5
F
43 49anti-parallel
Strand 6
F
68 73anti-parallel
Strand 7
F
141 147anti-parallel
Strand 8
F
107 126anti-parallel
Strand 9
F
91 101anti-parallel
Strand 10
F
5 11anti-parallel
Strand 11
F
15 16anti-parallel
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There are 11 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
5 11anti-parallel
Strand 3
E
91 101anti-parallel
Strand 4
E
107 127anti-parallel
Strand 5
F
43 49anti-parallel
Strand 6
F
68 73anti-parallel
Strand 7
F
141 147anti-parallel
Strand 8
F
107 126anti-parallel
Strand 9
F
91 101anti-parallel
Strand 10
F
5 11anti-parallel
Strand 11
F
39 41anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
48 49first strand
Strand 2
E
64 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il