Analysis of interatomic Contacts of Structural Units in PDB entry:
3HFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HFV entry

There is 1 chain in PDB entry 3HFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11PHE 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3HFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 36Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
48 68Right-handed alpha
Helix 4
4
A
86 90Right-handed alpha
Helix 5
5
A
91 94Right-handed 310
Helix 6
6
A
99 107Right-handed 310
Helix 7
7
A
119 122Right-handed 310
Helix 8
8
A
123 130Right-handed alpha
Helix 9
9
A
166 170Right-handed alpha
Helix 10
10
A
175 179Right-handed 310
Helix 11
11
A
196 220Right-handed alpha
Helix 12
12
A
221 223Right-handed 310
Helix 13
13
A
259 266Right-handed alpha
Helix 14
14
A
280 288Right-handed alpha
Helix 15
15
A
292 298Right-handed 310
Helix 16
16
A
300 305Right-handed alpha
Helix 17
17
A
306 308Right-handed 310
Helix 18
18
A
341 354Right-handed alpha
Helix 19
19
A
390 410Right-handed alpha
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There are 4 sheets in PDB entry 3HFV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
20 23anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
134 142parallel
Strand 3
A
154 165anti-parallel
Strand 4
A
271 279anti-parallel
Strand 5
A
248 258anti-parallel
Strand 6
A
235 245anti-parallel
Strand 7
A
225 232anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
114 116anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 367first strand
Strand 2
A
374 382anti-parallel
Strand 3
A
327 334anti-parallel
Strand 4
A
412 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il