Analysis of interatomic Contacts of Structural Units in PDB entry:
3HKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HKV entry

There are 2 chains in PDB entry 3HKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TRP 817PRO 1008
B
ASN 818PRO 1008
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3HKV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
827 840Right-handed alpha
Helix 2
2
A
841 846Right-handed 310
Helix 3
3
A
858 876Right-handed alpha
Helix 4
4
A
890 892Right-handed 310
Helix 5
5
A
893 901Right-handed alpha
Helix 6
6
A
923 928Right-handed alpha
Helix 7
7
B
827 840Right-handed alpha
Helix 8
8
B
841 846Right-handed 310
Helix 9
9
B
858 876Right-handed alpha
Helix 10
10
B
892 901Right-handed alpha
Helix 11
11
B
923 928Right-handed alpha
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There are 4 sheets in PDB entry 3HKV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
820 822first strand
Strand 2
A
848 856anti-parallel
Strand 3
A
996 1006anti-parallel
Strand 4
A
940 949anti-parallel
Strand 5
A
882 889anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
918 921first strand
Strand 2
A
987 990anti-parallel
Strand 3
A
977 979anti-parallel
Strand 4
A
953 955parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
820 822first strand
Strand 2
B
848 856anti-parallel
Strand 3
B
996 1006anti-parallel
Strand 4
B
941 948anti-parallel
Strand 5
B
883 889anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
918 921first strand
Strand 2
B
987 990anti-parallel
Strand 3
B
977 979anti-parallel
Strand 4
B
953 955parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il