Analysis of interatomic Contacts of Structural Units in PDB entry:
3HMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HMM entry

There is 1 chain in PDB entry 3HMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1GLN 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3HMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 3Right-handed 310
Helix 2
2
A
35 37Right-handed 310
Helix 3
3
A
38 50Right-handed alpha
Helix 4
4
A
87 95Right-handed alpha
Helix 5
5
A
98 118Right-handed alpha
Helix 6
6
A
175 179Right-handed 310
Helix 7
7
A
180 185Right-handed alpha
Helix 8
8
A
192 214Right-handed alpha
Helix 9
9
A
237 246Right-handed alpha
Helix 10
10
A
255 260Right-handed 310
Helix 11
11
A
261 273Right-handed alpha
Helix 12
12
A
278 282Right-handed 310
Helix 13
13
A
284 298Right-handed alpha
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There are 3 sheets in PDB entry 3HMM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 13first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
74 81anti-parallel
Strand 5
A
62 69anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
156 159anti-parallel
Strand 3
A
164 165anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
147 149anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il