Analysis of interatomic Contacts of Structural Units in PDB entry:
3HN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HN8 entry

There are 3 chains in PDB entry 3HN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 295	SER 573
B	GLY 295	SER 573
C	GLY 295	SER 573

There are 15 helices in PDB entry 3HN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	371	375	Right-handed 310
Helix 2	2	A	403	410	Right-handed alpha
Helix 3	3	A	508	512	Right-handed 310
Helix 4	4	A	541	550	Right-handed alpha
Helix 5	5	A	567	571	Right-handed 310
Helix 6	6	B	371	375	Right-handed 310
Helix 7	7	B	403	410	Right-handed alpha
Helix 8	8	B	508	512	Right-handed 310
Helix 9	9	B	541	550	Right-handed alpha
Helix 10	10	B	567	571	Right-handed 310
Helix 11	11	C	371	375	Right-handed 310
Helix 12	12	C	403	410	Right-handed alpha
Helix 13	13	C	508	512	Right-handed 310
Helix 14	14	C	541	550	Right-handed alpha
Helix 15	15	C	567	571	Right-handed 310

There are 15 sheets in PDB entry 3HN8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	368	first strand
Strand 2	A	313	322	anti-parallel
Strand 3	A	300	308	anti-parallel
Strand 4	A	416	419	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	350	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	379	386	anti-parallel
Strand 4	A	394	401	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	498	first strand
Strand 2	A	450	454	anti-parallel
Strand 3	A	432	435	anti-parallel
Strand 4	A	561	564	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	440	first strand
Strand 2	A	445	447	anti-parallel
Strand 3	A	501	503	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	484	first strand
Strand 2	A	467	475	anti-parallel
Strand 3	A	513	520	anti-parallel
Strand 4	A	528	535	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	368	first strand
Strand 2	B	313	322	anti-parallel
Strand 3	B	300	308	anti-parallel
Strand 4	B	416	419	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	350	first strand
Strand 2	B	335	342	anti-parallel
Strand 3	B	379	386	anti-parallel
Strand 4	B	394	401	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	498	first strand
Strand 2	B	450	454	anti-parallel
Strand 3	B	432	435	anti-parallel
Strand 4	B	561	564	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	440	first strand
Strand 2	B	445	447	anti-parallel
Strand 3	B	501	503	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	484	first strand
Strand 2	B	467	475	anti-parallel
Strand 3	B	513	520	anti-parallel
Strand 4	B	528	535	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	368	first strand
Strand 2	C	313	322	anti-parallel
Strand 3	C	300	308	anti-parallel
Strand 4	C	416	419	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	350	first strand
Strand 2	C	335	342	anti-parallel
Strand 3	C	379	386	anti-parallel
Strand 4	C	394	401	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	498	first strand
Strand 2	C	450	454	anti-parallel
Strand 3	C	432	435	anti-parallel
Strand 4	C	561	564	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	438	440	first strand
Strand 2	C	445	447	anti-parallel
Strand 3	C	501	503	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	478	484	first strand
Strand 2	C	467	475	anti-parallel
Strand 3	C	513	520	anti-parallel
Strand 4	C	528	535	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HN8