Analysis of interatomic Contacts of Structural Units in PDB entry:
3HOX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3HOX entry

There are 16 chains in PDB entry 3HOX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	PRO 1455
B	ASP 20	PHE 1224
C	GLU 3	ASP 268
D	VAL 3	TYR 221
E	ASP 2	MET 215
F	LEU 69	LEU 155
G	MET 1	ILE 171
H	MET 1	ARG 146
I	THR 2	GLN 120
J	MET 1	PRO 65
K	MET 1	LEU 114
L	ALA 25	ARG 70
N	A 1	T 7
T	A 10	C 22
T	G 24	C 27
P	C 1	U 11

There are140 helices in PDB entry 3HOX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	31	Right-handed alpha
Helix 2	2	A	41	45	Right-handed 310
Helix 3	3	A	95	104	Right-handed alpha
Helix 4	4	A	119	124	Right-handed alpha
Helix 5	5	A	130	143	Right-handed alpha
Helix 6	6	A	203	214	Right-handed alpha
Helix 7	7	A	215	222	Right-handed alpha
Helix 8	8	A	230	233	Right-handed 310
Helix 9	9	A	243	247	Right-handed 310
Helix 10	10	A	260	281	Right-handed alpha
Helix 11	11	A	285	303	Right-handed alpha
Helix 12	12	A	324	330	Right-handed alpha
Helix 13	13	A	368	372	Right-handed alpha
Helix 14	14	A	384	395	Right-handed alpha
Helix 15	15	A	451	453	Right-handed 310
Helix 16	16	A	474	479	Right-handed alpha
Helix 17	17	A	494	505	Right-handed alpha
Helix 18	18	A	506	511	Right-handed alpha
Helix 19	19	A	524	536	Right-handed alpha
Helix 20	20	A	543	553	Right-handed alpha
Helix 21	21	A	574	579	Right-handed alpha
Helix 22	22	A	618	623	Right-handed alpha
Helix 23	23	A	628	638	Right-handed alpha
Helix 24	24	A	638	661	Right-handed alpha
Helix 25	25	A	665	670	Right-handed 310
Helix 26	26	A	672	699	Right-handed alpha
Helix 27	27	A	709	737	Right-handed alpha
Helix 28	28	A	741	750	Right-handed alpha
Helix 29	29	A	754	763	Right-handed alpha
Helix 30	30	A	793	797	Right-handed 310
Helix 31	31	A	809	830	Right-handed alpha
Helix 32	32	A	831	844	Right-handed alpha
Helix 33	33	A	867	871	Right-handed 310
Helix 34	34	A	884	887	Right-handed 310
Helix 35	35	A	889	898	Right-handed alpha
Helix 36	36	A	913	917	Right-handed 310
Helix 37	37	A	924	947	Right-handed alpha
Helix 38	38	A	961	971	Right-handed alpha
Helix 39	39	A	982	996	Right-handed alpha
Helix 40	40	A	1004	1026	Right-handed alpha
Helix 41	41	A	1027	1034	Right-handed alpha
Helix 42	42	A	1038	1057	Right-handed alpha
Helix 43	43	A	1063	1074	Right-handed alpha
Helix 44	44	A	1075	1077	Right-handed 310
Helix 45	45	A	1097	1106	Right-handed alpha
Helix 46	46	A	1127	1139	Right-handed alpha
Helix 47	47	A	1142	1146	Right-handed alpha
Helix 48	48	A	1166	1173	Right-handed alpha
Helix 49	49	A	1200	1205	Right-handed alpha
Helix 50	50	A	1208	1221	Right-handed alpha
Helix 51	51	A	1255	1269	Right-handed alpha
Helix 52	52	A	1312	1317	Right-handed alpha
Helix 53	53	A	1331	1339	Right-handed alpha
Helix 54	54	A	1340	1359	Right-handed alpha
Helix 55	55	A	1365	1377	Right-handed alpha
Helix 56	56	A	1388	1392	Right-handed 310
Helix 57	57	A	1395	1401	Right-handed alpha
Helix 58	58	A	1404	1415	Right-handed alpha
Helix 59	59	A	1423	1431	Right-handed alpha
Helix 60	60	A	1436	1439	Right-handed 310
Helix 61	61	A	1448	1453	Right-handed alpha
Helix 62	62	B	28	41	Right-handed alpha
Helix 63	63	B	44	57	Right-handed alpha
Helix 64	64	B	57	64	Right-handed alpha
Helix 65	65	B	113	120	Right-handed alpha
Helix 66	66	B	179	183	Right-handed 310
Helix 67	67	B	185	193	Right-handed alpha
Helix 68	68	B	282	289	Right-handed alpha
Helix 69	69	B	295	302	Right-handed alpha
Helix 70	70	B	307	322	Right-handed alpha
Helix 71	71	B	326	333	Right-handed alpha
Helix 72	72	B	346	358	Right-handed alpha
Helix 73	73	B	370	390	Right-handed alpha
Helix 74	74	B	400	402	Right-handed 310
Helix 75	75	B	408	433	Right-handed alpha
Helix 76	76	B	450	464	Right-handed alpha
Helix 77	77	B	487	496	Right-handed alpha
Helix 78	78	B	551	560	Right-handed alpha
Helix 79	79	B	565	569	Right-handed 310
Helix 80	80	B	592	605	Right-handed alpha
Helix 81	81	B	654	667	Right-handed alpha
Helix 82	82	B	680	687	Right-handed alpha
Helix 83	83	B	695	699	Right-handed alpha
Helix 84	84	B	744	749	Right-handed 310
Helix 85	85	B	750	755	Right-handed alpha
Helix 86	86	B	758	762	Right-handed 310
Helix 87	87	B	763	774	Right-handed alpha
Helix 88	88	B	775	777	Right-handed 310
Helix 89	89	B	784	788	Right-handed 310
Helix 90	90	B	808	813	Right-handed alpha
Helix 91	91	B	842	848	Right-handed alpha
Helix 92	92	B	1013	1017	Right-handed 310
Helix 93	93	B	1022	1039	Right-handed alpha
Helix 94	94	B	1051	1061	Right-handed alpha
Helix 95	95	B	1098	1102	Right-handed 310
Helix 96	96	B	1121	1125	Right-handed 310
Helix 97	97	B	1131	1142	Right-handed alpha
Helix 98	98	B	1143	1152	Right-handed alpha
Helix 99	99	B	1197	1210	Right-handed alpha
Helix 100	100	C	26	40	Right-handed alpha
Helix 101	101	C	59	70	Right-handed alpha
Helix 102	102	C	75	80	Right-handed 310
Helix 103	103	C	82	86	Right-handed 310
Helix 104	104	C	116	118	Right-handed 310
Helix 105	105	C	167	171	Right-handed 310
Helix 106	106	C	196	201	Right-handed alpha
Helix 107	107	C	204	208	Right-handed 310
Helix 108	108	C	241	268	Right-handed alpha
Helix 109	109	D	30	34	Right-handed 310
Helix 110	110	D	53	70	Right-handed alpha
Helix 111	111	D	119	134	Right-handed alpha
Helix 112	112	D	138	151	Right-handed alpha
Helix 113	113	D	158	168	Right-handed alpha
Helix 114	114	D	173	183	Right-handed alpha
Helix 115	115	D	187	195	Right-handed alpha
Helix 116	116	D	203	218	Right-handed alpha
Helix 117	117	E	2	4	Right-handed 310
Helix 118	118	E	5	26	Right-handed alpha
Helix 119	119	E	38	47	Right-handed alpha
Helix 120	120	E	67	72	Right-handed alpha
Helix 121	121	E	89	103	Right-handed alpha
Helix 122	122	E	120	124	Right-handed 310
Helix 123	123	E	137	141	Right-handed alpha
Helix 124	124	E	143	147	Right-handed 310
Helix 125	125	E	159	167	Right-handed alpha
Helix 126	126	E	171	175	Right-handed 310
Helix 127	127	E	182	188	Right-handed alpha
Helix 128	128	F	86	103	Right-handed alpha
Helix 129	129	F	116	127	Right-handed alpha
Helix 130	130	G	22	34	Right-handed alpha
Helix 131	131	G	50	54	Right-handed 310
Helix 132	132	G	113	115	Right-handed 310
Helix 133	133	H	83	87	Right-handed 310
Helix 134	134	J	16	27	Right-handed alpha
Helix 135	135	J	31	40	Right-handed alpha
Helix 136	136	J	43	53	Right-handed alpha
Helix 137	137	J	56	62	Right-handed alpha
Helix 138	138	K	5	10	Right-handed 310
Helix 139	139	K	39	51	Right-handed alpha
Helix 140	140	K	82	111	Right-handed alpha

There are 47 sheets in PDB entry 3HOX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	19	anti-parallel
Strand 3	B	1214	1217	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	235	238	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	161	163	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	180	184	anti-parallel
Strand 3	A	199	202	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	B	1129	1130	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1104	1106	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	486	490	anti-parallel
Strand 4	A	441	445	anti-parallel
Strand 5	A	455	463	anti-parallel
Strand 6	A	363	367	parallel
Strand 7	A	468	470	anti-parallel
Strand 8	A	348	355	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	402	407	anti-parallel
Strand 4	A	411	414	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	571	573	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	589	first strand
Strand 2	A	606	608	anti-parallel
Strand 3	A	611	614	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel
Strand 3	A	863	865	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	882	first strand
Strand 2	A	953	956	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1283	1287	first strand
Strand 2	A	1303	1307	anti-parallel
Strand 3	A	1116	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1226	1228	first strand
Strand 2	A	1237	1240	anti-parallel
Strand 3	A	1191	1197	anti-parallel
Strand 4	A	1147	1154	anti-parallel
Strand 5	I	42	45	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	G	3	13	anti-parallel
Strand 3	G	68	79	anti-parallel
Strand 4	G	59	61	anti-parallel
Strand 5	A	1441	1445	anti-parallel
Strand 6	F	132	137	anti-parallel
Strand 7	F	143	147	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	G	3	13	anti-parallel
Strand 3	G	68	79	anti-parallel
Strand 4	G	43	48	anti-parallel
Strand 5	G	37	39	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	97	first strand
Strand 2	B	127	133	anti-parallel
Strand 3	B	165	169	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	109	110	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	211	anti-parallel
Strand 3	B	481	482	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	497	499	parallel
Strand 4	B	537	538	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	236	241	anti-parallel
Strand 3	B	253	256	anti-parallel
Strand 4	B	270	272	anti-parallel
Strand 5	B	279	281	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	690	694	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	740	741	anti-parallel
Strand 4	B	703	704	parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	590	first strand
Strand 2	B	578	582	anti-parallel
Strand 3	B	623	627	parallel
Strand 4	B	614	618	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	961	972	anti-parallel
Strand 4	B	948	951	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	961	972	anti-parallel
Strand 4	B	954	957	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	805	first strand
Strand 2	B	1042	1043	parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	979	980	first strand
Strand 2	B	988	992	anti-parallel
Strand 3	B	838	841	parallel
Strand 4	B	1010	1012	anti-parallel
Strand 5	B	821	827	parallel
Strand 6	B	1088	1092	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	916	first strand
Strand 2	B	935	936	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1070	1073	first strand
Strand 2	B	1080	1085	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1158	1163	first strand
Strand 2	B	1191	1196	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	228	230	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	97	104	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	45	51	anti-parallel
Strand 4	L	65	68	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	143	147	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	44	45	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	78	81	anti-parallel
Strand 3	E	107	112	parallel
Strand 4	E	131	136	parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	206	214	parallel
Strand 3	E	195	202	anti-parallel

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There are 7 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	142	152	anti-parallel
Strand 3	G	157	162	anti-parallel
Strand 4	G	107	111	parallel
Strand 5	G	98	102	anti-parallel
Strand 6	G	85	95	anti-parallel
Strand 7	G	142	152	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	122	first strand
Strand 2	G	129	131	anti-parallel
Strand 3	G	136	138	anti-parallel

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There are 9 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	98	first strand
Strand 2	H	141	145	anti-parallel
Strand 3	H	54	58	anti-parallel
Strand 4	H	7	16	anti-parallel
Strand 5	H	24	30	anti-parallel
Strand 6	H	37	42	anti-parallel
Strand 7	H	121	125	anti-parallel
Strand 8	H	115	118	anti-parallel
Strand 9	H	100	101	anti-parallel

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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	19	first strand
Strand 2	I	24	28	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	I	83	84	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	102	first strand
Strand 2	I	109	110	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3HOX

Analysis of interatomic Contacts of Structural Units in PDB entry:
3HOX