Analysis of interatomic Contacts of Structural Units in PDB entry:
3HPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HPN entry

There are 6 chains in PDB entry 3HPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 1CYS 174
B
GLU 1CYS 174
C
GLU 1CYS 174
D
GLU 1CYS 174
E
GLU 1CYS 174
F
GLU 1CYS 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3HPN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
77 81Right-handed 310
Helix 2
2
A
108 112Right-handed 310
Helix 3
3
A
125 129Right-handed 310
Helix 4
4
B
77 81Right-handed 310
Helix 5
5
B
108 112Right-handed 310
Helix 6
6
B
125 129Right-handed 310
Helix 7
7
C
77 81Right-handed 310
Helix 8
8
C
108 112Right-handed 310
Helix 9
9
C
125 131Right-handed alpha
Helix 10
10
D
77 81Right-handed 310
Helix 11
11
D
108 112Right-handed 310
Helix 12
12
D
125 132Right-handed alpha
Helix 13
13
E
77 81Right-handed 310
Helix 14
14
E
108 112Right-handed 310
Helix 15
15
E
125 129Right-handed 310
Helix 16
16
F
77 81Right-handed 310
Helix 17
17
F
108 112Right-handed 310
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There are 24 sheets in PDB entry 3HPN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 6first strand
Strand 2
A
161 171anti-parallel
Strand 3
A
35 43anti-parallel
Strand 4
A
26 32anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 6first strand
Strand 2
A
161 171anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
137 143anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 19first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
150 157anti-parallel
Strand 4
A
59 60anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 19first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
150 157anti-parallel
Strand 4
A
92 99anti-parallel
Strand 5
A
113 118anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 6first strand
Strand 2
B
161 171anti-parallel
Strand 3
B
35 43anti-parallel
Strand 4
B
26 32anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 6first strand
Strand 2
B
161 171anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
137 143anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 19first strand
Strand 2
B
52 55anti-parallel
Strand 3
B
150 157anti-parallel
Strand 4
B
59 60anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 19first strand
Strand 2
B
52 55anti-parallel
Strand 3
B
150 157anti-parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
113 118anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2 6first strand
Strand 2
C
161 171anti-parallel
Strand 3
C
35 43anti-parallel
Strand 4
C
26 32anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2 6first strand
Strand 2
C
161 171anti-parallel
Strand 3
C
67 75anti-parallel
Strand 4
C
137 143anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
17 19first strand
Strand 2
C
52 55anti-parallel
Strand 3
C
150 157anti-parallel
Strand 4
C
59 60anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
17 19first strand
Strand 2
C
52 55anti-parallel
Strand 3
C
150 157anti-parallel
Strand 4
C
92 99anti-parallel
Strand 5
C
113 118anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2 6first strand
Strand 2
D
161 171anti-parallel
Strand 3
D
35 43anti-parallel
Strand 4
D
26 32anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2 6first strand
Strand 2
D
161 171anti-parallel
Strand 3
D
67 75anti-parallel
Strand 4
D
137 143anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 19first strand
Strand 2
D
52 55anti-parallel
Strand 3
D
150 157anti-parallel
Strand 4
D
59 60anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
17 19first strand
Strand 2
D
52 55anti-parallel
Strand 3
D
150 157anti-parallel
Strand 4
D
92 99anti-parallel
Strand 5
D
113 118anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2 6first strand
Strand 2
E
161 171anti-parallel
Strand 3
E
35 43anti-parallel
Strand 4
E
26 32anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
2 6first strand
Strand 2
E
161 171anti-parallel
Strand 3
E
67 75anti-parallel
Strand 4
E
137 143anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
17 19first strand
Strand 2
E
52 55anti-parallel
Strand 3
E
150 157anti-parallel
Strand 4
E
59 60anti-parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
17 19first strand
Strand 2
E
52 55anti-parallel
Strand 3
E
150 157anti-parallel
Strand 4
E
92 99anti-parallel
Strand 5
E
113 118anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
2 6first strand
Strand 2
F
161 171anti-parallel
Strand 3
F
35 43anti-parallel
Strand 4
F
26 32anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
2 6first strand
Strand 2
F
161 171anti-parallel
Strand 3
F
67 75anti-parallel
Strand 4
F
137 143anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
17 19first strand
Strand 2
F
52 55anti-parallel
Strand 3
F
150 157anti-parallel
Strand 4
F
59 60anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
17 19first strand
Strand 2
F
52 55anti-parallel
Strand 3
F
150 157anti-parallel
Strand 4
F
92 99anti-parallel
Strand 5
F
113 118anti-parallel
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