Analysis of interatomic Contacts of Structural Units in PDB entry:
3HQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HQR entry

There are 2 chains in PDB entry 3HQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 184LYS 408
S
 ASP 558LEU 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 3HQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
189 197Right-handed alpha
Helix 2
2
A
197 206Right-handed alpha
Helix 3
3
A
214 232Right-handed alpha
Helix 4
4
A
247 251Right-handed 310
Helix 5
5
A
266 283Right-handed alpha
Helix 6
6
A
335 340Right-handed alpha
Helix 7
7
A
393 405Right-handed alpha
Helix 8
8
S
558 562Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 3HQR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
383 392anti-parallel
Strand 5
A
298 303anti-parallel
Strand 6
A
255 259anti-parallel
Strand 7
A
236 237anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
383 392anti-parallel
Strand 5
A
292 295anti-parallel
Strand 6
S
572 573anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 313first strand
Strand 2
A
374 379anti-parallel
Strand 3
A
343 345anti-parallel
Strand 4
A
354 356anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il