Analysis of interatomic Contacts of Structural Units in PDB entry:
3HVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3HVJ entry

There are 2 chains in PDB entry 3HVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 46PRO 258
B
 GLY 45PRO 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3HVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 60Right-handed alpha
Helix 2
2
A
64 79Right-handed alpha
Helix 3
3
A
85 101Right-handed alpha
Helix 4
4
A
113 121Right-handed alpha
Helix 5
5
A
135 150Right-handed alpha
Helix 6
6
A
161 166Right-handed alpha
Helix 7
7
A
168 174Right-handed alpha
Helix 8
8
A
186 188Right-handed 310
Helix 9
9
A
189 200Right-handed alpha
Helix 10
10
A
219 229Right-handed alpha
Helix 11
11
B
47 60Right-handed alpha
Helix 12
12
B
64 79Right-handed alpha
Helix 13
13
B
85 101Right-handed alpha
Helix 14
14
B
113 121Right-handed alpha
Helix 15
15
B
135 150Right-handed alpha
Helix 16
16
B
161 166Right-handed alpha
Helix 17
17
B
168 174Right-handed alpha
Helix 18
18
B
186 188Right-handed 310
Helix 19
19
B
189 200Right-handed alpha
Helix 20
20
B
219 229Right-handed alpha
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There are 2 sheets in PDB entry 3HVJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 159first strand
Strand 2
A
128 133parallel
Strand 3
A
104 108parallel
Strand 4
A
178 183parallel
Strand 5
A
203 211parallel
Strand 6
A
247 255anti-parallel
Strand 7
A
232 240anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 159first strand
Strand 2
B
128 133parallel
Strand 3
B
104 108parallel
Strand 4
B
178 183parallel
Strand 5
B
203 211parallel
Strand 6
B
247 255anti-parallel
Strand 7
B
232 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il