Analysis of interatomic Contacts of Structural Units in PDB entry:
3I60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3I60 entry

There is 1 chain in PDB entry 3I60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 6TYR 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3I60. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
59 76Right-handed alpha
Helix 2
2
A
110 117Right-handed alpha
Helix 3
3
A
120 141Right-handed alpha
Helix 4
4
A
149 151Right-handed 310
Helix 5
5
A
188 192Right-handed 310
Helix 6
6
A
193 198Right-handed alpha
Helix 7
7
A
205 222Right-handed alpha
Helix 8
8
A
230 243Right-handed alpha
Helix 9
9
A
246 251Right-handed alpha
Helix 10
10
A
255 265Right-handed alpha
Helix 11
11
A
272 277Right-handed alpha
Helix 12
12
A
281 292Right-handed alpha
Helix 13
13
A
301 307Right-handed alpha
Helix 14
14
A
308 312Right-handed 310
Helix 15
15
A
316 320Right-handed 310
Helix 16
16
A
332 336Right-handed 310
Helix 17
17
A
337 349Right-handed alpha
Helix 18
18
A
350 353Right-handed 310
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There are 4 sheets in PDB entry 3I60. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 12first strand
Strand 2
A
15 17anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 31first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
86 89anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 109first strand
Strand 2
A
153 155anti-parallel
Strand 3
A
161 163anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
143 144first strand
Strand 2
A
170 171anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il