Analysis of interatomic Contacts of Structural Units in PDB entry:
3I8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3I8C entry

There are 2 chains in PDB entry 3I8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1HIS 1140
B
ASN 124PHE 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3I8C. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
250 255Right-handed alpha
Helix 2
2
A
381 385Right-handed 310
Helix 3
3
A
1044 1062Right-handed alpha
Helix 4
4
A
1069 1074Right-handed alpha
Helix 5
5
A
1091 1097Right-handed alpha
Helix 6
6
A
1098 1100Right-handed 310
Helix 7
7
A
1101 1108Right-handed alpha
Helix 8
8
A
1127 1138Right-handed alpha
Helix 9
9
B
125 135Right-handed alpha
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There are 24 sheets in PDB entry 3I8C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1004 1009first strand
Strand 2
A
1025 1032anti-parallel
Strand 3
A
1037 1042anti-parallel
Strand 4
A
4 10anti-parallel
Strand 5
A
1088 1090parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 21first strand
Strand 2
A
30 34anti-parallel
Strand 3
A
38 44anti-parallel
Strand 4
A
49 56anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 67first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
85 94anti-parallel
Strand 4
A
97 107anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 124first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
141 144anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 169first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
187 194anti-parallel
Strand 4
A
210 212anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
218 221first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
244 248anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 263first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
279 290anti-parallel
Strand 4
A
293 307anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
313 316first strand
Strand 2
A
321 325anti-parallel
Strand 3
A
331 336anti-parallel
Strand 4
A
347 353anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
359 364first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
386 392anti-parallel
Strand 4
A
710 712anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
427 428first strand
Strand 2
A
433 434anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
467 468first strand
Strand 2
A
477 480anti-parallel
Strand 3
A
488 489anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
519 520first strand
Strand 2
A
527 528anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
538 542first strand
Strand 2
A
556 560anti-parallel
Strand 3
A
566 569anti-parallel
Strand 4
A
579 580anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
593 595first strand
Strand 2
A
600 605anti-parallel
Strand 3
A
611 616anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
637 640first strand
Strand 2
A
649 652anti-parallel
Strand 3
A
657 659anti-parallel
Strand 4
A
669 670anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
678 680first strand
Strand 2
A
692 694anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
720 727first strand
Strand 2
A
732 742anti-parallel
Strand 3
A
785 795anti-parallel
Strand 4
A
801 806anti-parallel
Strand 5
A
762 765parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
811 820first strand
Strand 2
A
827 835anti-parallel
Strand 3
A
846 853anti-parallel
Strand 4
A
858 862anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
811 820first strand
Strand 2
A
827 835anti-parallel
Strand 3
A
846 853anti-parallel
Strand 4
A
865 866anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
870 875first strand
Strand 2
A
880 884anti-parallel
Strand 3
A
888 893anti-parallel
Strand 4
A
899 900anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
870 875first strand
Strand 2
A
880 884anti-parallel
Strand 3
A
888 893anti-parallel
Strand 4
A
904 905anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
921 923first strand
Strand 2
A
931 936anti-parallel
Strand 3
A
941 947anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
954 959first strand
Strand 2
A
965 969anti-parallel
Strand 3
A
973 979anti-parallel
Strand 4
A
992 999anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1076 1078first strand
Strand 2
A
1081 1083anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il