Analysis of interatomic Contacts of Structural Units in PDB entry:
3IH9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IH9 entry

There are 2 chains in PDB entry 3IH9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 448
B
 MET 1LEU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3IH9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 17Right-handed alpha
Helix 2
2
A
28 33Right-handed alpha
Helix 3
3
A
63 65Right-handed 310
Helix 4
4
A
66 79Right-handed alpha
Helix 5
5
A
79 87Right-handed alpha
Helix 6
6
A
98 103Right-handed alpha
Helix 7
7
A
113 124Right-handed alpha
Helix 8
8
A
130 147Right-handed alpha
Helix 9
9
A
153 162Right-handed alpha
Helix 10
10
A
164 177Right-handed alpha
Helix 11
11
A
183 196Right-handed alpha
Helix 12
12
A
200 213Right-handed alpha
Helix 13
13
A
226 241Right-handed alpha
Helix 14
14
A
242 244Right-handed 310
Helix 15
15
A
245 253Right-handed alpha
Helix 16
16
A
288 303Right-handed alpha
Helix 17
17
A
312 315Right-handed 310
Helix 18
18
A
336 349Right-handed alpha
Helix 19
19
A
366 375Right-handed alpha
Helix 20
20
A
375 384Right-handed alpha
Helix 21
21
A
388 395Right-handed alpha
Helix 22
22
A
398 402Right-handed 310
Helix 23
23
A
418 434Right-handed alpha
Helix 24
24
B
3 17Right-handed alpha
Helix 25
25
B
28 33Right-handed alpha
Helix 26
26
B
63 65Right-handed 310
Helix 27
27
B
66 79Right-handed alpha
Helix 28
28
B
79 85Right-handed alpha
Helix 29
29
B
98 103Right-handed alpha
Helix 30
30
B
113 124Right-handed alpha
Helix 31
31
B
130 147Right-handed alpha
Helix 32
32
B
153 162Right-handed alpha
Helix 33
33
B
164 177Right-handed alpha
Helix 34
34
B
183 195Right-handed alpha
Helix 35
35
B
200 213Right-handed alpha
Helix 36
36
B
226 241Right-handed alpha
Helix 37
37
B
242 244Right-handed 310
Helix 38
38
B
245 253Right-handed alpha
Helix 39
39
B
288 303Right-handed alpha
Helix 40
40
B
312 315Right-handed 310
Helix 41
41
B
336 349Right-handed alpha
Helix 42
42
B
366 374Right-handed alpha
Helix 43
43
B
375 382Right-handed alpha
Helix 44
44
B
388 395Right-handed alpha
Helix 45
45
B
396 398Right-handed 310
Helix 46
46
B
418 434Right-handed alpha
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There are 7 sheets in PDB entry 3IH9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
273 278anti-parallel
Strand 4
A
264 269anti-parallel
Strand 5
A
257 259anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
198 199anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 322first strand
Strand 2
A
326 335anti-parallel
Strand 3
A
406 417parallel
Strand 4
A
438 442parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
40 44anti-parallel
Strand 3
B
273 278anti-parallel
Strand 4
B
264 269anti-parallel
Strand 5
B
257 259anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
198 199anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 322first strand
Strand 2
B
326 331anti-parallel
Strand 3
B
406 410parallel
Strand 4
B
438 442parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
414 417parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il