Analysis of interatomic Contacts of Structural Units in PDB entry:
3IJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3IJE entry

There are 2 chains in PDB entry 3IJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 1ILE 967
B
GLY 1VAL 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3IJE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
175 180Right-handed alpha
Helix 2
2
A
188 195Right-handed alpha
Helix 3
3
A
214 218Right-handed 310
Helix 4
4
A
245 250Right-handed alpha
Helix 5
5
A
500 505Right-handed alpha
Helix 6
6
A
904 909Right-handed alpha
Helix 7
7
B
4 9Right-handed alpha
Helix 8
8
B
12 20Right-handed alpha
Helix 9
9
B
41 47Right-handed alpha
Helix 10
10
B
121 123Right-handed 310
Helix 11
11
B
124 132Right-handed alpha
Helix 12
12
B
135 146Right-handed alpha
Helix 13
13
B
171 175Right-handed 310
Helix 14
14
B
200 210Right-handed alpha
Helix 15
15
B
221 232Right-handed alpha
Helix 16
16
B
232 237Right-handed alpha
Helix 17
17
B
258 262Right-handed 310
Helix 18
18
B
291 302Right-handed alpha
Helix 19
19
B
314 325Right-handed alpha
Helix 20
20
B
339 352Right-handed alpha
Helix 21
21
B
573 577Right-handed 310
Helix 22
22
B
606 621Right-handed alpha
Helix 23
23
B
623 628Right-handed alpha
Helix 24
24
B
630 635Right-handed alpha
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There are 28 sheets in PDB entry 3IJE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 12first strand
Strand 2
A
431 435anti-parallel
Strand 3
A
421 426anti-parallel
Strand 4
A
404 412anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 26first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
67 69anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 81first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 88first strand
Strand 2
A
113 114anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 101first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
135 139anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 163first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
208 209anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
225 229first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
263 268anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
280 283first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
314 319anti-parallel
Strand 4
A
327 332anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 303first strand
Strand 2
A
309 311anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 348first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
372 379anti-parallel
Strand 4
A
382 383anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 348first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
372 379anti-parallel
Strand 4
A
389 392anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
511 513first strand
Strand 2
A
534 542anti-parallel
Strand 3
A
471 482anti-parallel
Strand 4
A
440 449anti-parallel
Strand 5
A
577 578parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
453 454first strand
Strand 2
A
585 592parallel
Strand 3
A
555 563anti-parallel
Strand 4
A
490 499anti-parallel
Strand 5
A
520 528anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
606 611first strand
Strand 2
A
623 633anti-parallel
Strand 3
A
692 701anti-parallel
Strand 4
A
651 656anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
616 618first strand
Strand 2
A
730 737parallel
Strand 3
A
710 718anti-parallel
Strand 4
A
642 646anti-parallel
Strand 5
A
678 682anti-parallel
Strand 6
A
667 671anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
742 748first strand
Strand 2
A
775 784anti-parallel
Strand 3
A
893 903anti-parallel
Strand 4
A
809 817anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
752 754first strand
Strand 2
A
941 952parallel
Strand 3
A
918 930anti-parallel
Strand 4
A
792 802anti-parallel
Strand 5
A
878 886anti-parallel
Strand 6
A
820 824anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
752 754first strand
Strand 2
A
941 952parallel
Strand 3
A
918 930anti-parallel
Strand 4
A
871 872parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 65first strand
Strand 2
B
87 92anti-parallel
Strand 3
B
425 431parallel
Strand 4
B
412 418anti-parallel
Strand 5
B
355 360anti-parallel
Strand 6
B
385 386anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 105first strand
Strand 2
B
394 403anti-parallel
Strand 3
B
366 375anti-parallel
Strand 4
B
378 381anti-parallel
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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
190 197first strand
Strand 2
B
149 156anti-parallel
Strand 3
B
112 119parallel
Strand 4
B
243 250parallel
Strand 5
B
304 311parallel
Strand 6
B
329 333parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
454 456first strand
Strand 2
B
459 461anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
500 502first strand
Strand 2
B
505 507anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
516 517first strand
Strand 2
B
523 524anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
540 542first strand
Strand 2
B
547 549anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
553 554first strand
Strand 2
B
560 561anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
579 581first strand
Strand 2
B
586 588anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
638 640first strand
Strand 2
B
678 681parallel
Strand 3
B
664 670anti-parallel
Strand 4
B
654 658anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il