Analysis of interatomic Contacts of Structural Units in PDB entry:
3J45


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J45 entry

There are 11 chains in PDB entry 3J45 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
y
 GLY 6GLY 440
E
 GLU 74PHE 127
G
 PHE 9ILE 73
T
 MET 1GLU 100
U
 ALA 1LYS 103
Y
 MET 1ALA 63
1
 A 52 U 114
2
 A 1307 A 1342
3
 C 1526 G 1543
4
 C 1838 U 1898
5
 U 2092 A 2199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3J45. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
y
6 16Right-handed alpha
Helix 2
2
y
16 39Right-handed alpha
Helix 3
3
y
45 56Right-handed alpha
Helix 4
4
y
58 69Right-handed alpha
Helix 5
5
y
69 74Right-handed alpha
Helix 6
6
y
82 99Right-handed alpha
Helix 7
7
y
99 108Right-handed alpha
Helix 8
8
y
108 139Right-handed alpha
Helix 9
9
y
140 142Right-handed 310
Helix 10
10
y
153 182Right-handed alpha
Helix 11
11
y
185 197Right-handed alpha
Helix 12
12
y
198 210Right-handed alpha
Helix 13
13
y
215 239Right-handed alpha
Helix 14
14
y
274 297Right-handed alpha
Helix 15
15
y
301 311Right-handed alpha
Helix 16
16
y
317 336Right-handed alpha
Helix 17
17
y
340 349Right-handed alpha
Helix 18
18
y
359 392Right-handed alpha
Helix 19
19
y
403 438Right-handed alpha
Helix 20
20
E
75 87Right-handed alpha
Helix 21
21
E
94 126Right-handed alpha
Helix 22
22
G
10 31Right-handed alpha
Helix 23
23
G
53 72Right-handed alpha
Helix 24
24
T
4 8Right-handed 310
Helix 25
25
T
22 27Right-handed alpha
Helix 26
26
T
40 45Right-handed alpha
Helix 27
27
T
45 50Right-handed alpha
Helix 28
28
Y
2 7Right-handed alpha
Helix 29
29
Y
9 22Right-handed alpha
Helix 30
30
Y
25 33Right-handed alpha
Helix 31
31
Y
39 61Right-handed alpha
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There are 6 sheets in PDB entry 3J45. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
y
244 245first strand
Strand 2
y
264 265anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
31 34first strand
Strand 2
T
80 84anti-parallel
Strand 3
T
59 63anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
54 55first strand
Strand 2
T
87 89anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
32 33first strand
Strand 2
U
64 65anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
41 44first strand
Strand 2
U
57 60anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
82 87first strand
Strand 2
U
91 95anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il