Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3J7Z entry

There are 35 chains in PDB entry 3J7Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ALA 1	LYS 56
1	GLY 3	LYS 52
2	MET 1	LYS 46
3	PRO 1	ALA 64
4	MET 1	GLY 38
5	MET 1	ALA 148
6	SER 1	PHE 30
7	C 74	A 76
A	G 1	U 2903
B	G 2	A 119
C	ALA 1	SER 271
D	MET 1	ALA 209
E	MET 1	ALA 201
F	ALA 1	ARG 177
G	SER 1	LYS 176
H	MET 1	ARG 50
I	ALA 1	ASP 141
J	MET 1	ILE 142
K	MET 1	VAL 122
L	ARG 2	GLU 144
M	MET 1	MET 136
N	MET 1	GLU 120
O	ASP 2	PHE 117
P	SER 1	ASN 114
Q	ALA 1	ALA 117
R	MET 1	ALA 103
S	MET 1	ARG 110
T	MET 1	LEU 93
U	ALA 1	ILE 102
V	MET 1	ALA 94
W	GLY 6	GLU 84
X	SER 1	TYR 77
Y	MET 1	ALA 63
Z	ALA 1	GLU 58
a	ILE 78	ILE 84

There are112 helices in PDB entry 3J7Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	0	8	16	Right-handed alpha
Helix 2	2	0	17	19	Right-handed 310
Helix 3	3	2	8	17	Right-handed alpha
Helix 4	4	2	17	23	Right-handed alpha
Helix 5	5	2	24	37	Right-handed alpha
Helix 6	6	3	6	11	Right-handed alpha
Helix 7	7	3	36	43	Right-handed alpha
Helix 8	8	3	53	61	Right-handed alpha
Helix 9	9	4	30	34	Right-handed 310
Helix 10	10	5	3	8	Right-handed alpha
Helix 11	11	5	8	19	Right-handed alpha
Helix 12	12	5	33	47	Right-handed alpha
Helix 13	13	5	59	64	Right-handed alpha
Helix 14	14	5	94	104	Right-handed alpha
Helix 15	15	5	133	138	Right-handed 310
Helix 16	16	5	139	148	Right-handed alpha
Helix 17	17	6	3	7	Right-handed 310
Helix 18	18	6	15	20	Right-handed alpha
Helix 19	19	6	24	29	Right-handed alpha
Helix 20	20	C	29	31	Right-handed 310
Helix 21	21	C	130	134	Right-handed 310
Helix 22	22	C	197	202	Right-handed 310
Helix 23	23	C	206	212	Right-handed alpha
Helix 24	24	C	220	224	Right-handed 310
Helix 25	25	C	262	264	Right-handed 310
Helix 26	26	D	56	60	Right-handed 310
Helix 27	27	D	61	70	Right-handed alpha
Helix 28	28	D	97	102	Right-handed 310
Helix 29	29	E	15	20	Right-handed alpha
Helix 30	30	E	24	37	Right-handed alpha
Helix 31	31	E	97	113	Right-handed alpha
Helix 32	32	E	130	142	Right-handed alpha
Helix 33	33	E	154	160	Right-handed alpha
Helix 34	34	E	176	183	Right-handed alpha
Helix 35	35	E	189	200	Right-handed alpha
Helix 36	36	F	2	9	Right-handed alpha
Helix 37	37	F	11	20	Right-handed alpha
Helix 38	38	F	23	27	Right-handed 310
Helix 39	39	F	40	44	Right-handed 310
Helix 40	40	F	46	60	Right-handed alpha
Helix 41	41	F	91	105	Right-handed alpha
Helix 42	42	F	133	137	Right-handed 310
Helix 43	43	F	141	145	Right-handed 310
Helix 44	44	F	161	171	Right-handed alpha
Helix 45	45	G	61	81	Right-handed alpha
Helix 46	46	G	136	150	Right-handed alpha
Helix 47	47	H	9	13	Right-handed 310
Helix 48	48	H	22	29	Right-handed alpha
Helix 49	49	H	30	34	Right-handed 310
Helix 50	50	I	23	28	Right-handed 310
Helix 51	51	I	33	37	Right-handed 310
Helix 52	52	I	40	44	Right-handed 310
Helix 53	53	I	106	111	Right-handed alpha
Helix 54	54	I	112	116	Right-handed 310
Helix 55	55	I	122	132	Right-handed alpha
Helix 56	56	J	7	11	Right-handed 310
Helix 57	57	J	26	38	Right-handed alpha
Helix 58	58	J	58	62	Right-handed 310
Helix 59	59	J	67	72	Right-handed alpha
Helix 60	60	J	88	95	Right-handed alpha
Helix 61	61	J	98	107	Right-handed alpha
Helix 62	62	J	112	120	Right-handed alpha
Helix 63	63	J	132	136	Right-handed 310
Helix 64	64	K	71	75	Right-handed 310
Helix 65	65	K	104	108	Right-handed 310
Helix 66	66	K	112	118	Right-handed alpha
Helix 67	67	L	21	26	Right-handed alpha
Helix 68	68	L	56	61	Right-handed alpha
Helix 69	69	L	70	72	Right-handed 310
Helix 70	70	L	82	86	Right-handed 310
Helix 71	71	L	128	137	Right-handed alpha
Helix 72	72	M	43	58	Right-handed alpha
Helix 73	73	M	109	122	Right-handed alpha
Helix 74	74	N	13	32	Right-handed alpha
Helix 75	75	N	38	56	Right-handed alpha
Helix 76	76	N	59	69	Right-handed alpha
Helix 77	77	N	72	82	Right-handed alpha
Helix 78	78	N	82	87	Right-handed alpha
Helix 79	79	O	4	22	Right-handed alpha
Helix 80	80	O	55	60	Right-handed alpha
Helix 81	81	O	67	85	Right-handed alpha
Helix 82	82	O	103	113	Right-handed alpha
Helix 83	83	P	2	10	Right-handed alpha
Helix 84	84	P	52	55	Right-handed 310
Helix 85	85	P	77	81	Right-handed 310
Helix 86	86	P	96	102	Right-handed 310
Helix 87	87	P	103	107	Right-handed 310
Helix 88	88	Q	6	20	Right-handed alpha
Helix 89	89	Q	25	30	Right-handed alpha
Helix 90	90	Q	30	71	Right-handed alpha
Helix 91	91	Q	74	85	Right-handed alpha
Helix 92	92	Q	93	95	Right-handed 310
Helix 93	93	Q	96	101	Right-handed alpha
Helix 94	94	Q	101	117	Right-handed alpha
Helix 95	95	S	20	24	Right-handed 310
Helix 96	96	S	28	38	Right-handed alpha
Helix 97	97	S	41	62	Right-handed alpha
Helix 98	98	S	89	91	Right-handed 310
Helix 99	99	T	17	24	Right-handed alpha
Helix 100	100	T	40	50	Right-handed alpha
Helix 101	101	T	51	53	Right-handed 310
Helix 102	102	V	13	23	Right-handed alpha
Helix 103	103	V	44	52	Right-handed alpha
Helix 104	104	V	54	59	Right-handed alpha
Helix 105	105	X	53	62	Right-handed alpha
Helix 106	106	X	62	72	Right-handed alpha
Helix 107	107	Y	9	23	Right-handed alpha
Helix 108	108	Y	23	34	Right-handed alpha
Helix 109	109	Y	40	59	Right-handed alpha
Helix 110	110	Z	16	27	Right-handed alpha
Helix 111	111	Z	40	50	Right-handed alpha
Helix 112	112	Z	51	54	Right-handed 310

There are 50 sheets in PDB entry 3J7Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	27	29	first strand
Strand 2	0	36	38	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	47	48	first strand
Strand 2	0	51	52	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	19	24	first strand
Strand 2	1	6	12	anti-parallel
Strand 3	1	44	49	anti-parallel
Strand 4	1	35	39	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	17	19	first strand
Strand 2	4	22	24	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	16	18	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	61	62	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	115	116	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	90	92	anti-parallel
Strand 3	C	102	103	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	171	174	anti-parallel
Strand 3	C	180	183	anti-parallel
Strand 4	C	266	268	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	186	189	anti-parallel
Strand 4	D	177	181	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	15	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	4	8	anti-parallel
Strand 4	D	200	203	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	47	51	anti-parallel
Strand 3	D	80	83	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	68	first strand
Strand 2	F	83	90	anti-parallel
Strand 3	F	30	36	anti-parallel
Strand 4	F	152	157	anti-parallel
Strand 5	F	129	130	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	9	first strand
Strand 2	G	48	53	anti-parallel
Strand 3	G	40	43	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	24	first strand
Strand 2	G	34	36	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	87	first strand
Strand 2	G	129	134	anti-parallel
Strand 3	G	120	123	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	95	first strand
Strand 2	G	104	105	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	114	115	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	36	37	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	59	first strand
Strand 2	I	67	68	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	123	first strand
Strand 2	J	54	57	parallel
Strand 3	J	16	19	parallel
Strand 4	J	138	139	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	77	first strand
Strand 2	J	84	86	anti-parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	92	94	first strand
Strand 2	K	83	88	anti-parallel
Strand 3	K	57	64	anti-parallel
Strand 4	K	38	43	anti-parallel
Strand 5	K	18	24	anti-parallel
Strand 6	K	5	10	anti-parallel
Strand 7	K	83	88	parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	76	79	first strand
Strand 2	P	69	74	anti-parallel
Strand 3	P	57	61	anti-parallel
Strand 4	P	45	49	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	76	first strand
Strand 2	L	107	109	parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	91	first strand
Strand 2	L	121	123	parallel
Strand 3	L	141	143	parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	65	first strand
Strand 2	M	101	105	anti-parallel
Strand 3	M	31	34	anti-parallel
Strand 4	M	129	132	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	42	first strand
Strand 2	M	93	96	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	74	75	first strand
Strand 2	M	88	89	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	110	115	anti-parallel
Strand 3	N	95	98	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	47	50	first strand
Strand 2	O	35	40	anti-parallel
Strand 3	O	25	30	anti-parallel
Strand 4	O	91	93	parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	37	43	first strand
Strand 2	P	26	32	anti-parallel
Strand 3	P	82	84	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	14	first strand
Strand 2	R	2	6	anti-parallel
Strand 3	R	38	42	anti-parallel
Strand 4	R	46	48	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	20	23	first strand
Strand 2	R	92	96	anti-parallel
Strand 3	R	59	68	anti-parallel
Strand 4	R	32	35	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	72	78	first strand
Strand 2	R	83	89	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	11	first strand
Strand 2	S	100	108	anti-parallel
Strand 3	S	70	78	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	82	83	first strand
Strand 2	S	97	98	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	86	87	first strand
Strand 2	S	93	94	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	14	first strand
Strand 2	T	32	34	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	61	63	first strand
Strand 2	T	80	82	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	67	68	first strand
Strand 2	T	75	76	anti-parallel

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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	64	65	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	21	27	anti-parallel
Strand 4	U	9	12	anti-parallel
Strand 5	U	69	71	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	45	first strand
Strand 2	U	56	61	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	82	84	first strand
Strand 2	U	93	95	anti-parallel

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There are 6 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	62	65	first strand
Strand 2	V	3	8	parallel
Strand 3	V	38	43	anti-parallel
Strand 4	V	25	31	anti-parallel
Strand 5	V	86	93	parallel
Strand 6	V	72	79	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	49	50	first strand
Strand 2	W	59	60	anti-parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	65	66	first strand
Strand 2	W	81	82	anti-parallel

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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	12	14	first strand
Strand 2	X	26	28	anti-parallel

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There are 2 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	35	38	first strand
Strand 2	X	45	48	anti-parallel

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There are 3 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	35	37	first strand
Strand 2	Z	4	7	anti-parallel
Strand 3	Z	55	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3J7Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
3J7Z