Analysis of interatomic Contacts of Structural Units in PDB entry:
3J8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J8B entry

There are 8 chains in PDB entry 3J8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 4UNK 1033
C
HIS 116UNK 1024
E
TYR 4UNK 1025
F
GLY 89UNK 1068
H
LYS 37UNK 1120
K
ALA 2UNK 1016
L
LYS 267UNK 1023
M
LEU 188UNK 1027
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are130 helices in PDB entry 3J8B. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 21Right-handed alpha
Helix 2
2
A
24 36Right-handed alpha
Helix 3
3
A
38 42Right-handed 310
Helix 4
4
A
45 61Right-handed alpha
Helix 5
5
A
64 78Right-handed alpha
Helix 6
6
A
83 107Right-handed alpha
Helix 7
7
A
147 164Right-handed alpha
Helix 8
8
A
167 169Right-handed 310
Helix 9
9
A
171 188Right-handed alpha
Helix 10
10
A
191 213Right-handed alpha
Helix 11
11
A
223 243Right-handed alpha
Helix 12
12
A
246 262Right-handed alpha
Helix 13
13
A
269 286Right-handed alpha
Helix 14
14
A
289 304Right-handed alpha
Helix 15
15
A
312 328Right-handed alpha
Helix 16
16
A
336 342Right-handed alpha
Helix 17
17
A
353 359Right-handed alpha
Helix 18
18
A
367 375Right-handed alpha
Helix 19
19
A
377 382Right-handed alpha
Helix 20
20
A
385 396Right-handed alpha
Helix 21
21
A
403 416Right-handed alpha
Helix 22
22
A
418 426Right-handed alpha
Helix 23
23
A
428 446Right-handed alpha
Helix 24
24
A
452 458Right-handed alpha
Helix 25
25
A
464 477Right-handed alpha
Helix 26
26
A
1001 1032Right-handed alpha
Helix 27
27
C
117 131Right-handed alpha
Helix 28
28
C
137 149Right-handed alpha
Helix 29
29
C
158 178Right-handed alpha
Helix 30
30
C
185 205Right-handed alpha
Helix 31
31
C
226 232Right-handed alpha
Helix 32
32
C
232 251Right-handed alpha
Helix 33
33
C
257 282Right-handed alpha
Helix 34
34
C
288 300Right-handed alpha
Helix 35
35
C
305 318Right-handed alpha
Helix 36
36
C
333 345Right-handed alpha
Helix 37
37
C
352 369Right-handed alpha
Helix 38
38
C
372 382Right-handed alpha
Helix 39
39
C
385 389Right-handed alpha
Helix 40
40
C
394 413Right-handed alpha
Helix 41
41
C
416 428Right-handed alpha
Helix 42
42
C
432 436Right-handed alpha
Helix 43
43
C
441 448Right-handed alpha
Helix 44
44
C
451 457Right-handed alpha
Helix 45
45
C
469 493Right-handed alpha
Helix 46
46
C
505 513Right-handed alpha
Helix 47
47
C
523 536Right-handed alpha
Helix 48
48
C
539 553Right-handed alpha
Helix 49
49
C
562 588Right-handed alpha
Helix 50
50
C
594 601Right-handed alpha
Helix 51
51
C
605 619Right-handed alpha
Helix 52
52
C
1001 1023Right-handed alpha
Helix 53
53
E
5 13Right-handed alpha
Helix 54
54
E
15 20Right-handed alpha
Helix 55
55
E
20 30Right-handed alpha
Helix 56
56
E
34 46Right-handed alpha
Helix 57
57
E
50 59Right-handed alpha
Helix 58
58
E
66 93Right-handed alpha
Helix 59
59
E
123 141Right-handed alpha
Helix 60
60
E
143 153Right-handed alpha
Helix 61
61
E
165 180Right-handed alpha
Helix 62
62
E
181 195Right-handed alpha
Helix 63
63
E
204 219Right-handed alpha
Helix 64
64
E
231 237Right-handed alpha
Helix 65
65
E
249 263Right-handed alpha
Helix 66
66
E
269 274Right-handed alpha
Helix 67
67
E
280 289Right-handed alpha
Helix 68
68
E
291 302Right-handed alpha
Helix 69
69
E
305 320Right-handed alpha
Helix 70
70
E
325 327Right-handed 310
Helix 71
71
E
328 348Right-handed alpha
Helix 72
72
E
353 360Right-handed alpha
Helix 73
73
E
363 377Right-handed alpha
Helix 74
74
E
1001 1025Right-handed alpha
Helix 75
75
F
95 110Right-handed alpha
Helix 76
76
F
149 164Right-handed alpha
Helix 77
77
F
182 194Right-handed alpha
Helix 78
78
F
242 253Right-handed alpha
Helix 79
79
F
1001 1015Right-handed alpha
Helix 80
80
F
1016 1039Right-handed alpha
Helix 81
81
F
1047 1068Right-handed alpha
Helix 82
82
H
43 60Right-handed alpha
Helix 83
83
H
96 110Right-handed alpha
Helix 84
84
H
131 144Right-handed alpha
Helix 85
85
H
208 216Right-handed alpha
Helix 86
86
H
1001 1027Right-handed alpha
Helix 87
87
H
1036 1047Right-handed alpha
Helix 88
88
H
1072 1120Right-handed alpha
Helix 89
89
K
3 16Right-handed alpha
Helix 90
90
K
18 21Right-handed 310
Helix 91
91
K
23 39Right-handed alpha
Helix 92
92
K
43 56Right-handed alpha
Helix 93
93
K
58 60Right-handed 310
Helix 94
94
K
63 76Right-handed alpha
Helix 95
95
K
80 88Right-handed alpha
Helix 96
96
K
90 95Right-handed alpha
Helix 97
97
K
98 111Right-handed alpha
Helix 98
98
K
113 121Right-handed alpha
Helix 99
99
K
125 130Right-handed alpha
Helix 100
100
K
133 150Right-handed alpha
Helix 101
101
K
154 162Right-handed alpha
Helix 102
102
K
166 178Right-handed alpha
Helix 103
103
K
1001 1016Right-handed alpha
Helix 104
104
L
268 283Right-handed alpha
Helix 105
105
L
287 297Right-handed alpha
Helix 106
106
L
301 307Right-handed alpha
Helix 107
107
L
309 326Right-handed alpha
Helix 108
108
L
329 340Right-handed alpha
Helix 109
109
L
357 378Right-handed alpha
Helix 110
110
L
394 403Right-handed alpha
Helix 111
111
L
406 415Right-handed alpha
Helix 112
112
L
417 422Right-handed alpha
Helix 113
113
L
445 464Right-handed alpha
Helix 114
114
L
471 481Right-handed alpha
Helix 115
115
L
486 499Right-handed alpha
Helix 116
116
L
1001 1023Right-handed alpha
Helix 117
117
M
189 198Right-handed alpha
Helix 118
118
M
201 202Right-handed 310
Helix 119
119
M
203 214Right-handed alpha
Helix 120
120
M
220 225Right-handed alpha
Helix 121
121
M
228 230Right-handed alpha
Helix 122
122
M
235 246Right-handed alpha
Helix 123
123
M
248 255Right-handed alpha
Helix 124
124
M
257 259Right-handed 310
Helix 125
125
M
261 267Right-handed alpha
Helix 126
126
M
269 289Right-handed alpha
Helix 127
127
M
294 302Right-handed alpha
Helix 128
128
M
304 313Right-handed alpha
Helix 129
129
M
315 321Right-handed alpha
Helix 130
130
M
1001 1027Right-handed alpha
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There are 7 sheets in PDB entry 3J8B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
449 451first strand
Strand 2
A
490 492anti-parallel
Strand 3
A
483 485anti-parallel
Strand 4
C
591 593parallel
Strand 5
C
631 633anti-parallel
Strand 6
C
624 626anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
350 352first strand
Strand 2
E
390 392anti-parallel
Strand 3
E
384 385anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
91 94first strand
Strand 2
F
128 136parallel
Strand 3
F
117 123anti-parallel
Strand 4
F
168 174anti-parallel
Strand 5
F
198 202parallel
Strand 6
F
213 219anti-parallel
Strand 7
F
231 239anti-parallel
Strand 8
F
91 94parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
139 142first strand
Strand 2
F
145 148anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
198 200first strand
Strand 2
H
164 169anti-parallel
Strand 3
H
148 152anti-parallel
Strand 4
H
115 121parallel
Strand 5
H
64 71anti-parallel
Strand 6
H
76 83anti-parallel
Strand 7
H
39 42parallel
Strand 8
H
203 206parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
469 470first strand
Strand 2
L
513 514anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
291 293first strand
Strand 2
M
331 333anti-parallel
Strand 3
M
324 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il