Analysis of interatomic Contacts of Structural Units in PDB entry:
3J9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3J9F entry

There are 7 chains in PDB entry 3J9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ALA 20TYR 302
2
 ALA 6GLN 272
3
 GLY 1ALA 235
4
 GLY 2ASN 69
7
 ASP 28ALA 143
8
 LYS 144PRO 243
9
 PRO 244PRO 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3J9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
46 50Right-handed 310
Helix 2
2
1
56 60Right-handed 310
Helix 3
3
1
72 75Right-handed 310
Helix 4
4
1
76 82Right-handed alpha
Helix 5
5
1
116 123Right-handed alpha
Helix 6
6
1
172 177Right-handed 310
Helix 7
7
1
232 236Right-handed 310
Helix 8
8
2
35 37Right-handed 310
Helix 9
9
2
43 47Right-handed 310
Helix 10
10
2
56 60Right-handed 310
Helix 11
11
2
83 87Right-handed 310
Helix 12
12
2
89 98Right-handed alpha
Helix 13
13
2
144 149Right-handed alpha
Helix 14
14
2
150 154Right-handed 310
Helix 15
15
2
177 181Right-handed 310
Helix 16
16
2
186 193Right-handed 310
Helix 17
17
3
42 48Right-handed alpha
Helix 18
18
3
64 69Right-handed 310
Helix 19
19
3
98 105Right-handed alpha
Helix 20
20
3
144 149Right-handed alpha
Helix 21
21
4
35 39Right-handed 310
Helix 22
22
4
50 55Right-handed alpha
Helix 23
23
7
114 118Right-handed 310
Helix 24
24
8
211 215Right-handed 310
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There are 19 sheets in PDB entry 3J9F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
44 45first strand
Strand 2
3
163 168anti-parallel
Strand 3
3
114 120anti-parallel
Strand 4
3
207 216anti-parallel
Strand 5
3
51 52anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
44 45first strand
Strand 2
3
163 168anti-parallel
Strand 3
3
114 120anti-parallel
Strand 4
3
207 216anti-parallel
Strand 5
3
70 73anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
85 94first strand
Strand 2
1
253 271anti-parallel
Strand 3
1
125 142anti-parallel
Strand 4
1
205 206anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
192 196first strand
Strand 2
1
125 142anti-parallel
Strand 3
1
253 271anti-parallel
Strand 4
3
39 40anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
106 109first strand
Strand 2
1
239 244anti-parallel
Strand 3
1
154 160anti-parallel
Strand 4
1
182 186anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
205 210parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
246 263anti-parallel
Strand 5
2
64 65anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
205 210parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
246 263anti-parallel
Strand 5
2
69 72anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
155 156first strand
Strand 2
2
78 82anti-parallel
Strand 3
2
227 239anti-parallel
Strand 4
2
118 128anti-parallel
Strand 5
2
195 199anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
83 86first strand
Strand 2
3
189 194anti-parallel
Strand 3
3
129 135anti-parallel
Strand 4
3
152 157anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
177 178first strand
Strand 2
3
107 111anti-parallel
Strand 3
3
221 225anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
4 7first strand
Strand 2
4
26 29anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
30 32first strand
Strand 2
7
50 52anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
36 37first strand
Strand 2
7
132 139parallel
Strand 3
7
119 126anti-parallel
Strand 4
7
63 68anti-parallel
Strand 5
7
76 79anti-parallel
Strand 6
7
83 86anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
45 47first strand
Strand 2
7
108 110anti-parallel
Strand 3
7
92 94anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
8
146 151first strand
Strand 2
8
161 171anti-parallel
Strand 3
8
200 208anti-parallel
Strand 4
8
186 193anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
8
176 181first strand
Strand 2
8
218 224anti-parallel
Strand 3
8
232 237anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
9
245 249first strand
Strand 2
9
262 269anti-parallel
Strand 3
9
296 299anti-parallel
Strand 4
9
290 293anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
9
255 256first strand
Strand 2
9
320 330parallel
Strand 3
9
307 315anti-parallel
Strand 4
9
276 281anti-parallel
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