Analysis of interatomic Contacts of Structural Units in PDB entry:
3JTC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JTC entry

There are 16 chains in PDB entry 3JTC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 7SER 178
B
LEU 8GLU 180
C
ALA 1LEU 5
C
LEU 8LEU 13
C
ARG 15ARG 15
C
CYS 17ILE 18
C
ILE 21PHE 24
C
ALA 27LYS 28
C
ILE 30ASN 33
D
ALA 1LEU 5
D
LEU 8LEU 13
D
ARG 15ARG 15
D
CYS 17ILE 18
D
ILE 21PHE 24
D
ALA 27LYS 28
D
ILE 30ASN 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3JTC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
58 88Right-handed alpha
Helix 2
2
A
141 152Right-handed alpha
Helix 3
3
A
158 167Right-handed alpha
Helix 4
4
A
167 177Right-handed alpha
Helix 5
5
B
58 88Right-handed alpha
Helix 6
6
B
141 152Right-handed alpha
Helix 7
7
B
158 167Right-handed alpha
Helix 8
8
B
167 177Right-handed alpha
Helix 9
9
B
178 180Right-handed 310
Helix 10
10
C
5 9Right-handed 310
Helix 11
11
C
12 18Right-handed alpha
Helix 12
12
C
23 32Right-handed alpha
Helix 13
13
D
5 9Right-handed 310
Helix 14
14
D
12 18Right-handed alpha
Helix 15
15
D
23 33Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3JTC. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 52first strand
Strand 2
A
36 44anti-parallel
Strand 3
A
24 33anti-parallel
Strand 4
A
9 21anti-parallel
Strand 5
A
93 103anti-parallel
Strand 6
A
111 118anti-parallel
Strand 7
A
121 127anti-parallel
Strand 8
A
132 135anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
49 52first strand
Strand 2
B
36 44anti-parallel
Strand 3
B
24 33anti-parallel
Strand 4
B
10 21anti-parallel
Strand 5
B
93 102anti-parallel
Strand 6
B
111 118anti-parallel
Strand 7
B
121 127anti-parallel
Strand 8
B
132 135anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il