Analysis of interatomic Contacts of Structural Units in PDB entry:
3JUU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JUU entry

There are 2 chains in PDB entry 3JUU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23ASP 290
B
 GLU 23SER 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3JUU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 47Right-handed 310
Helix 2
2
A
143 147Right-handed 310
Helix 3
3
A
148 153Right-handed 310
Helix 4
4
A
170 174Right-handed 310
Helix 5
5
A
175 177Right-handed 310
Helix 6
6
A
272 276Right-handed alpha
Helix 7
7
B
44 47Right-handed 310
Helix 8
8
B
149 153Right-handed 310
Helix 9
9
B
170 174Right-handed 310
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There are 9 sheets in PDB entry 3JUU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
277 289anti-parallel
Strand 3
A
121 128anti-parallel
Strand 4
A
215 223anti-parallel
Strand 5
A
226 231anti-parallel
Strand 6
A
234 239anti-parallel
Strand 7
B
198 205anti-parallel
Strand 8
B
179 187anti-parallel
Strand 9
B
154 163anti-parallel
Strand 10
B
135 141anti-parallel
Strand 11
B
250 255anti-parallel
Strand 12
B
103 114anti-parallel
Strand 13
B
60 61anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
277 289anti-parallel
Strand 3
A
86 90anti-parallel
Strand 4
A
80 83anti-parallel
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There are 14 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
277 289anti-parallel
Strand 4
A
121 128anti-parallel
Strand 5
A
215 223anti-parallel
Strand 6
A
226 231anti-parallel
Strand 7
A
234 239anti-parallel
Strand 8
B
198 205anti-parallel
Strand 9
B
179 187anti-parallel
Strand 10
B
154 163anti-parallel
Strand 11
B
135 141anti-parallel
Strand 12
B
250 255anti-parallel
Strand 13
B
103 114anti-parallel
Strand 14
B
73 75parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
103 114anti-parallel
Strand 3
B
92 100anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
103 114anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
135 141anti-parallel
Strand 5
A
154 163anti-parallel
Strand 6
A
179 187anti-parallel
Strand 7
A
202 205anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
103 114anti-parallel
Strand 3
A
73 75parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 100first strand
Strand 2
A
103 114anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
135 141anti-parallel
Strand 5
A
154 163anti-parallel
Strand 6
A
179 187anti-parallel
Strand 7
A
198 199anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
277 290anti-parallel
Strand 3
B
86 90anti-parallel
Strand 4
B
80 83anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
277 290anti-parallel
Strand 3
B
121 128anti-parallel
Strand 4
B
215 223anti-parallel
Strand 5
B
226 231anti-parallel
Strand 6
B
234 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il