Analysis of interatomic Contacts of Structural Units in PDB entry:
3JVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JVZ entry

There are 6 chains in PDB entry 3JVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2MET 147
B
 ALA 2MET 147
C
 GLU 574GLY 950
D
 GLU 576GLN 949
X
 MET 1GLY 76
Y
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 3JVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
13 16Right-handed 310
Helix 3
3
A
86 90Right-handed 310
Helix 4
4
A
98 112Right-handed alpha
Helix 5
5
A
120 129Right-handed alpha
Helix 6
6
A
130 146Right-handed alpha
Helix 7
7
B
2 16Right-handed alpha
Helix 8
8
B
86 90Right-handed 310
Helix 9
9
B
98 112Right-handed alpha
Helix 10
10
B
120 129Right-handed alpha
Helix 11
11
B
130 146Right-handed alpha
Helix 12
12
C
574 588Right-handed alpha
Helix 13
13
C
603 605Right-handed 310
Helix 14
14
C
606 616Right-handed alpha
Helix 15
15
C
622 626Right-handed 310
Helix 16
16
C
642 656Right-handed alpha
Helix 17
17
C
685 703Right-handed alpha
Helix 18
18
C
712 721Right-handed alpha
Helix 19
19
C
725 727Right-handed 310
Helix 20
20
C
728 733Right-handed alpha
Helix 21
21
C
733 746Right-handed alpha
Helix 22
22
C
783 797Right-handed alpha
Helix 23
23
C
800 812Right-handed alpha
Helix 24
24
C
816 821Right-handed 310
Helix 25
25
C
824 834Right-handed alpha
Helix 26
26
C
839 845Right-handed alpha
Helix 27
27
C
857 870Right-handed alpha
Helix 28
28
C
871 884Right-handed alpha
Helix 29
29
C
892 895Right-handed 310
Helix 30
30
C
933 947Right-handed alpha
Helix 31
31
D
576 588Right-handed alpha
Helix 32
32
D
606 617Right-handed alpha
Helix 33
33
D
620 625Right-handed 310
Helix 34
34
D
643 656Right-handed alpha
Helix 35
35
D
657 661Right-handed 310
Helix 36
36
D
678 683Right-handed alpha
Helix 37
37
D
685 704Right-handed alpha
Helix 38
38
D
712 721Right-handed alpha
Helix 39
39
D
725 727Right-handed 310
Helix 40
40
D
728 733Right-handed alpha
Helix 41
41
D
733 746Right-handed alpha
Helix 42
42
D
748 752Right-handed 310
Helix 43
43
D
773 777Right-handed 310
Helix 44
44
D
783 797Right-handed alpha
Helix 45
45
D
800 812Right-handed alpha
Helix 46
46
D
816 821Right-handed alpha
Helix 47
47
D
826 833Right-handed alpha
Helix 48
48
D
839 846Right-handed alpha
Helix 49
49
D
857 870Right-handed alpha
Helix 50
50
D
871 884Right-handed alpha
Helix 51
51
D
892 895Right-handed 310
Helix 52
52
D
936 946Right-handed alpha
Helix 53
53
X
22 31Right-handed alpha
Helix 54
54
X
37 41Right-handed 310
Helix 55
55
Y
22 30Right-handed alpha
Helix 56
56
Y
30 35Right-handed alpha
Helix 57
57
Y
37 39Right-handed 310
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There are 15 sheets in PDB entry 3JVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
66 69anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
49 55anti-parallel
Strand 4
B
66 69anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
597 601first strand
Strand 2
C
627 631parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
663 665first strand
Strand 2
C
673 675anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
756 758first strand
Strand 2
C
767 769anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
848 850first strand
Strand 2
C
906 909parallel
Strand 3
C
925 928parallel
Strand 4
C
918 920anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
897 898first strand
Strand 2
C
901 902anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
597 603first strand
Strand 2
D
627 633parallel
Strand 3
D
639 641anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
663 665first strand
Strand 2
D
673 675anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
756 761first strand
Strand 2
D
764 769anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
848 850first strand
Strand 2
D
906 909parallel
Strand 3
D
925 928parallel
Strand 4
D
918 919anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
897 898first strand
Strand 2
D
901 902anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
12 16first strand
Strand 2
X
2 7anti-parallel
Strand 3
X
66 69parallel
Strand 4
X
43 44anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
12 15first strand
Strand 2
Y
3 6anti-parallel
Strand 3
Y
65 66parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
41 44first strand
Strand 2
Y
68 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il