Analysis of interatomic Contacts of Structural Units in PDB entry:
3JXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JXI entry

There are 4 chains in PDB entry 3JXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 132ALA 384
B
 MET 132HIS 387
C
 MET 132HIS 388
D
 MET 132HIS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 3JXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
136 147Right-handed alpha
Helix 2
2
A
148 153Right-handed 310
Helix 3
3
A
154 163Right-handed alpha
Helix 4
4
A
168 172Right-handed 310
Helix 5
5
A
179 186Right-handed alpha
Helix 6
6
A
194 206Right-handed alpha
Helix 7
7
A
208 214Right-handed alpha
Helix 8
8
A
226 234Right-handed alpha
Helix 9
9
A
236 246Right-handed alpha
Helix 10
10
A
273 281Right-handed alpha
Helix 11
11
A
283 293Right-handed alpha
Helix 12
12
A
309 318Right-handed alpha
Helix 13
13
A
321 343Right-handed alpha
Helix 14
14
A
347 351Right-handed 310
Helix 15
15
A
358 366Right-handed alpha
Helix 16
16
A
368 384Right-handed alpha
Helix 17
17
B
136 147Right-handed alpha
Helix 18
18
B
149 153Right-handed 310
Helix 19
19
B
154 163Right-handed alpha
Helix 20
20
B
168 172Right-handed 310
Helix 21
21
B
179 186Right-handed alpha
Helix 22
22
B
194 206Right-handed alpha
Helix 23
23
B
208 215Right-handed alpha
Helix 24
24
B
226 234Right-handed alpha
Helix 25
25
B
236 246Right-handed alpha
Helix 26
26
B
273 281Right-handed alpha
Helix 27
27
B
283 293Right-handed alpha
Helix 28
28
B
309 318Right-handed alpha
Helix 29
29
B
321 343Right-handed alpha
Helix 30
30
B
347 351Right-handed 310
Helix 31
31
B
358 366Right-handed alpha
Helix 32
32
B
368 387Right-handed alpha
Helix 33
33
C
136 147Right-handed alpha
Helix 34
34
C
154 163Right-handed alpha
Helix 35
35
C
168 172Right-handed 310
Helix 36
36
C
179 186Right-handed alpha
Helix 37
37
C
195 206Right-handed alpha
Helix 38
38
C
208 215Right-handed alpha
Helix 39
39
C
226 234Right-handed alpha
Helix 40
40
C
236 246Right-handed alpha
Helix 41
41
C
273 281Right-handed alpha
Helix 42
42
C
283 293Right-handed alpha
Helix 43
43
C
309 318Right-handed alpha
Helix 44
44
C
321 343Right-handed alpha
Helix 45
45
C
347 351Right-handed 310
Helix 46
46
C
358 367Right-handed alpha
Helix 47
47
C
368 387Right-handed alpha
Helix 48
48
D
136 147Right-handed alpha
Helix 49
49
D
154 162Right-handed alpha
Helix 50
50
D
168 172Right-handed 310
Helix 51
51
D
179 186Right-handed alpha
Helix 52
52
D
195 206Right-handed alpha
Helix 53
53
D
209 214Right-handed alpha
Helix 54
54
D
226 234Right-handed alpha
Helix 55
55
D
236 246Right-handed alpha
Helix 56
56
D
273 281Right-handed alpha
Helix 57
57
D
283 293Right-handed alpha
Helix 58
58
D
309 318Right-handed alpha
Helix 59
59
D
321 343Right-handed alpha
Helix 60
60
D
358 366Right-handed alpha
Helix 61
61
D
368 387Right-handed alpha
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There are 4 sheets in PDB entry 3JXI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
255 256anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
255 256anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 223first strand
Strand 2
C
255 256anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
217 218first strand
Strand 2
D
222 225anti-parallel
Strand 3
D
255 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il