Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JYN entry

There is 1 chain in PDB entry 3JYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3JYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
41 49Right-handed alpha
Helix 3
3
A
114 134Right-handed alpha
Helix 4
4
A
151 165Right-handed alpha
Helix 5
5
A
174 185Right-handed alpha
Helix 6
6
A
196 205Right-handed alpha
Helix 7
7
A
218 220Right-handed 310
Helix 8
8
A
221 227Right-handed alpha
Helix 9
9
A
250 256Right-handed alpha
Helix 10
10
A
265 270Right-handed alpha
Helix 11
11
A
274 289Right-handed alpha
Helix 12
12
A
304 314Right-handed alpha
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There are 4 sheets in PDB entry 3JYN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
17 21anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
30 39anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
84 87anti-parallel
Strand 5
A
106 108anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
30 39anti-parallel
Strand 3
A
321 324anti-parallel
Strand 4
A
298 301parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
167 172parallel
Strand 3
A
143 146parallel
Strand 4
A
210 215parallel
Strand 5
A
229 237parallel
Strand 6
A
260 262parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il