Analysis of interatomic Contacts of Structural Units in PDB entry:
3JYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3JYT entry

There are 5 chains in PDB entry 3JYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ALA 554
B
 SER 3GLN 428
T
 T 702 G 725
P
 C 803 G 816
P
 C 818 C 821
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3JYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 44Right-handed alpha
Helix 2
2
A
77 84Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
114 118Right-handed 310
Helix 5
5
A
123 128Right-handed 310
Helix 6
6
A
155 175Right-handed alpha
Helix 7
7
A
194 212Right-handed alpha
Helix 8
8
A
253 268Right-handed alpha
Helix 9
9
A
276 281Right-handed alpha
Helix 10
10
A
282 284Right-handed 310
Helix 11
11
A
296 310Right-handed alpha
Helix 12
12
A
363 384Right-handed alpha
Helix 13
13
A
394 405Right-handed alpha
Helix 14
14
A
473 483Right-handed alpha
Helix 15
15
A
483 488Right-handed alpha
Helix 16
16
A
500 506Right-handed alpha
Helix 17
17
A
515 528Right-handed alpha
Helix 18
18
A
544 554Right-handed alpha
Helix 19
19
B
27 44Right-handed alpha
Helix 20
20
B
77 84Right-handed alpha
Helix 21
21
B
97 102Right-handed 310
Helix 22
22
B
112 118Right-handed 310
Helix 23
23
B
121 126Right-handed alpha
Helix 24
24
B
134 138Right-handed 310
Helix 25
25
B
154 173Right-handed alpha
Helix 26
26
B
197 203Right-handed alpha
Helix 27
27
B
203 211Right-handed alpha
Helix 28
28
B
235 239Right-handed 310
Helix 29
29
B
253 265Right-handed alpha
Helix 30
30
B
276 281Right-handed alpha
Helix 31
31
B
297 302Right-handed alpha
Helix 32
32
B
363 382Right-handed alpha
Helix 33
33
B
394 402Right-handed alpha
Helix 34
34
B
424 428Right-handed 310
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There are 12 sheets in PDB entry 3JYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
130 132anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
68 75anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 183anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
239 241anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 353first strand
Strand 2
A
336 344anti-parallel
Strand 3
A
326 333anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 446first strand
Strand 2
A
452 458anti-parallel
Strand 3
A
464 470anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 497first strand
Strand 2
A
530 535parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
71 75anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
105 110anti-parallel
Strand 4
B
233 234anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 354first strand
Strand 2
B
337 342anti-parallel
Strand 3
B
326 331anti-parallel
Strand 4
B
388 391parallel
Strand 5
B
413 416parallel
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