Analysis of interatomic Contacts of Structural Units in PDB entry:
3K07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3K07 entry

There is 1 chain in PDB entry 3K07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5LEU 1040
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 3K07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 12Right-handed alpha
Helix 2
2
A
12 34Right-handed alpha
Helix 3
3
A
57 65Right-handed alpha
Helix 4
4
A
65 72Right-handed alpha
Helix 5
5
A
104 119Right-handed alpha
Helix 6
6
A
134 136Right-handed 310
Helix 7
7
A
152 163Right-handed alpha
Helix 8
8
A
163 169Right-handed alpha
Helix 9
9
A
192 199Right-handed alpha
Helix 10
10
A
202 212Right-handed alpha
Helix 11
11
A
239 245Right-handed alpha
Helix 12
12
A
296 312Right-handed alpha
Helix 13
13
A
313 315Right-handed 310
Helix 14
14
A
327 358Right-handed alpha
Helix 15
15
A
359 368Right-handed alpha
Helix 16
16
A
368 385Right-handed alpha
Helix 17
17
A
389 425Right-handed alpha
Helix 18
18
A
431 446Right-handed alpha
Helix 19
19
A
446 462Right-handed alpha
Helix 20
20
A
463 467Right-handed 310
Helix 21
21
A
468 496Right-handed alpha
Helix 22
22
A
496 504Right-handed alpha
Helix 23
23
A
516 535Right-handed alpha
Helix 24
24
A
535 549Right-handed alpha
Helix 25
25
A
550 555Right-handed alpha
Helix 26
26
A
581 597Right-handed alpha
Helix 27
27
A
632 636Right-handed 310
Helix 28
28
A
641 654Right-handed alpha
Helix 29
29
A
664 673Right-handed alpha
Helix 30
30
A
691 705Right-handed alpha
Helix 31
31
A
729 736Right-handed alpha
Helix 32
32
A
739 749Right-handed alpha
Helix 33
33
A
773 778Right-handed 310
Helix 34
34
A
779 786Right-handed alpha
Helix 35
35
A
798 802Right-handed alpha
Helix 36
36
A
832 848Right-handed alpha
Helix 37
37
A
861 874Right-handed alpha
Helix 38
38
A
874 892Right-handed alpha
Helix 39
39
A
893 902Right-handed alpha
Helix 40
40
A
903 918Right-handed alpha
Helix 41
41
A
925 955Right-handed alpha
Helix 42
42
A
956 960Right-handed 310
Helix 43
43
A
969 976Right-handed alpha
Helix 44
44
A
980 994Right-handed alpha
Helix 45
45
A
996 1001Right-handed alpha
Helix 46
46
A
1005 1040Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3K07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
79 86anti-parallel
Strand 5
A
813 816anti-parallel
Strand 6
A
819 826anti-parallel
Strand 7
A
714 715anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
79 86anti-parallel
Strand 5
A
813 816anti-parallel
Strand 6
A
819 826anti-parallel
Strand 7
A
681 687anti-parallel
Strand 8
A
854 860anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 181first strand
Strand 2
A
285 291anti-parallel
Strand 3
A
138 146anti-parallel
Strand 4
A
319 326anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 269first strand
Strand 2
A
185 191anti-parallel
Strand 3
A
764 771parallel
Strand 4
A
757 761anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 224first strand
Strand 2
A
227 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
256 258anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
274 278anti-parallel
Strand 3
A
602 610anti-parallel
Strand 4
A
626 630anti-parallel
Strand 5
A
569 576anti-parallel
Strand 6
A
658 663anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
921 922parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 727first strand
Strand 2
A
803 809anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
787 789first strand
Strand 2
A
795 797anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il