Analysis of interatomic Contacts of Structural Units in PDB entry:
3KCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KCF entry

There are 5 chains in PDB entry 3KCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 171GLY 500
B
 ILE 171ILE 501
C
 ILE 171GLY 500
D
 ILE 171GLY 500
E
 ILE 171GLY 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 3KCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
176 185Right-handed alpha
Helix 2
2
A
194 205Right-handed alpha
Helix 3
3
A
235 237Right-handed 310
Helix 4
4
A
238 250Right-handed alpha
Helix 5
5
A
270 274Right-handed 310
Helix 6
6
A
287 294Right-handed alpha
Helix 7
7
A
298 318Right-handed alpha
Helix 8
8
A
335 337Right-handed 310
Helix 9
9
A
380 385Right-handed alpha
Helix 10
10
A
393 413Right-handed alpha
Helix 11
11
A
437 445Right-handed alpha
Helix 12
12
A
455 460Right-handed 310
Helix 13
13
A
461 473Right-handed alpha
Helix 14
14
A
478 482Right-handed 310
Helix 15
15
A
484 499Right-handed alpha
Helix 16
16
B
176 187Right-handed alpha
Helix 17
17
B
194 203Right-handed alpha
Helix 18
18
B
238 250Right-handed alpha
Helix 19
19
B
270 274Right-handed 310
Helix 20
20
B
287 295Right-handed alpha
Helix 21
21
B
298 318Right-handed alpha
Helix 22
22
B
335 337Right-handed 310
Helix 23
23
B
375 379Right-handed 310
Helix 24
24
B
380 385Right-handed alpha
Helix 25
25
B
393 413Right-handed alpha
Helix 26
26
B
437 446Right-handed alpha
Helix 27
27
B
455 460Right-handed 310
Helix 28
28
B
461 476Right-handed alpha
Helix 29
29
B
478 482Right-handed 310
Helix 30
30
B
484 499Right-handed alpha
Helix 31
31
C
176 187Right-handed alpha
Helix 32
32
C
194 205Right-handed alpha
Helix 33
33
C
235 237Right-handed 310
Helix 34
34
C
238 250Right-handed alpha
Helix 35
35
C
270 274Right-handed 310
Helix 36
36
C
288 293Right-handed alpha
Helix 37
37
C
298 318Right-handed alpha
Helix 38
38
C
335 337Right-handed 310
Helix 39
39
C
375 379Right-handed 310
Helix 40
40
C
380 385Right-handed alpha
Helix 41
41
C
393 413Right-handed alpha
Helix 42
42
C
437 443Right-handed alpha
Helix 43
43
C
456 460Right-handed 310
Helix 44
44
C
463 473Right-handed alpha
Helix 45
45
C
478 482Right-handed 310
Helix 46
46
C
484 497Right-handed alpha
Helix 47
47
D
176 186Right-handed alpha
Helix 48
48
D
194 203Right-handed alpha
Helix 49
49
D
235 237Right-handed 310
Helix 50
50
D
238 250Right-handed alpha
Helix 51
51
D
270 274Right-handed 310
Helix 52
52
D
287 294Right-handed alpha
Helix 53
53
D
298 318Right-handed alpha
Helix 54
54
D
335 337Right-handed 310
Helix 55
55
D
375 379Right-handed 310
Helix 56
56
D
380 385Right-handed alpha
Helix 57
57
D
392 413Right-handed alpha
Helix 58
58
D
437 447Right-handed alpha
Helix 59
59
D
456 460Right-handed 310
Helix 60
60
D
461 476Right-handed alpha
Helix 61
61
D
478 482Right-handed 310
Helix 62
62
D
484 497Right-handed alpha
Helix 63
63
E
176 186Right-handed alpha
Helix 64
64
E
194 205Right-handed alpha
Helix 65
65
E
235 237Right-handed 310
Helix 66
66
E
238 250Right-handed alpha
Helix 67
67
E
270 274Right-handed 310
Helix 68
68
E
287 295Right-handed alpha
Helix 69
69
E
298 318Right-handed alpha
Helix 70
70
E
335 337Right-handed 310
Helix 71
71
E
375 379Right-handed 310
Helix 72
72
E
380 385Right-handed alpha
Helix 73
73
E
393 413Right-handed alpha
Helix 74
74
E
437 446Right-handed alpha
Helix 75
75
E
455 460Right-handed 310
Helix 76
76
E
461 476Right-handed alpha
Helix 77
77
E
478 482Right-handed 310
Helix 78
78
E
484 498Right-handed alpha
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There are 15 sheets in PDB entry 3KCF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
218 224anti-parallel
Strand 3
A
227 234anti-parallel
Strand 4
A
275 280anti-parallel
Strand 5
A
262 268anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
356 358anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
347 349anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 213first strand
Strand 2
B
218 224anti-parallel
Strand 3
B
227 234anti-parallel
Strand 4
B
276 280anti-parallel
Strand 5
B
262 267anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 330first strand
Strand 2
B
356 359anti-parallel
Strand 3
B
364 365anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
347 349anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 210first strand
Strand 2
C
218 224anti-parallel
Strand 3
C
227 234anti-parallel
Strand 4
C
275 280anti-parallel
Strand 5
C
262 268anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 287first strand
Strand 2
C
339 341anti-parallel
Strand 3
C
347 349anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 330first strand
Strand 2
C
356 358anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
206 213first strand
Strand 2
D
218 224anti-parallel
Strand 3
D
227 234anti-parallel
Strand 4
D
276 280anti-parallel
Strand 5
D
262 267anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
328 330first strand
Strand 2
D
356 359anti-parallel
Strand 3
D
364 365anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
339 341first strand
Strand 2
D
347 349anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
206 210first strand
Strand 2
E
218 224anti-parallel
Strand 3
E
227 234anti-parallel
Strand 4
E
276 280anti-parallel
Strand 5
E
262 267anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
328 330first strand
Strand 2
E
356 359anti-parallel
Strand 3
E
364 365anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
339 341first strand
Strand 2
E
347 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il