Analysis of interatomic Contacts of Structural Units in PDB entry:
3KDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KDS entry

There are 3 chains in PDB entry 3KDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 LYS 156GLU 603
F
 LYS 156GLU 603
G
 LYS 156GLU 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 3KDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
159 163Right-handed 310
Helix 2
2
E
166 182Right-handed alpha
Helix 3
3
E
183 188Right-handed alpha
Helix 4
4
E
206 217Right-handed alpha
Helix 5
5
E
236 253Right-handed alpha
Helix 6
6
E
261 265Right-handed 310
Helix 7
7
E
278 294Right-handed alpha
Helix 8
8
E
295 298Right-handed 310
Helix 9
9
E
332 344Right-handed alpha
Helix 10
10
E
354 361Right-handed alpha
Helix 11
11
E
366 383Right-handed alpha
Helix 12
12
E
390 404Right-handed alpha
Helix 13
13
E
413 434Right-handed alpha
Helix 14
14
E
468 491Right-handed alpha
Helix 15
15
E
494 496Right-handed 310
Helix 16
16
E
497 514Right-handed alpha
Helix 17
17
E
546 575Right-handed alpha
Helix 18
18
E
575 590Right-handed alpha
Helix 19
19
E
594 602Right-handed alpha
Helix 20
20
F
166 173Right-handed alpha
Helix 21
21
F
173 182Right-handed alpha
Helix 22
22
F
183 188Right-handed alpha
Helix 23
23
F
206 218Right-handed alpha
Helix 24
24
F
236 252Right-handed alpha
Helix 25
25
F
261 265Right-handed 310
Helix 26
26
F
278 294Right-handed alpha
Helix 27
27
F
295 298Right-handed 310
Helix 28
28
F
313 318Right-handed alpha
Helix 29
29
F
332 343Right-handed alpha
Helix 30
30
F
354 361Right-handed alpha
Helix 31
31
F
366 383Right-handed alpha
Helix 32
32
F
390 403Right-handed alpha
Helix 33
33
F
413 434Right-handed alpha
Helix 34
34
F
468 491Right-handed alpha
Helix 35
35
F
494 496Right-handed 310
Helix 36
36
F
497 514Right-handed alpha
Helix 37
37
F
546 575Right-handed alpha
Helix 38
38
F
575 590Right-handed alpha
Helix 39
39
F
594 602Right-handed alpha
Helix 40
40
G
166 173Right-handed alpha
Helix 41
41
G
173 182Right-handed alpha
Helix 42
42
G
183 188Right-handed alpha
Helix 43
43
G
206 218Right-handed alpha
Helix 44
44
G
236 252Right-handed alpha
Helix 45
45
G
261 265Right-handed 310
Helix 46
46
G
278 294Right-handed alpha
Helix 47
47
G
295 298Right-handed 310
Helix 48
48
G
332 343Right-handed alpha
Helix 49
49
G
354 361Right-handed alpha
Helix 50
50
G
366 383Right-handed alpha
Helix 51
51
G
390 404Right-handed alpha
Helix 52
52
G
413 434Right-handed alpha
Helix 53
53
G
468 480Right-handed alpha
Helix 54
54
G
480 491Right-handed alpha
Helix 55
55
G
494 496Right-handed 310
Helix 56
56
G
497 514Right-handed alpha
Helix 57
57
G
546 575Right-handed alpha
Helix 58
58
G
575 590Right-handed alpha
Helix 59
59
G
594 602Right-handed alpha
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There are 6 sheets in PDB entry 3KDS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
222 223first strand
Strand 2
E
255 259parallel
Strand 3
E
300 306parallel
Strand 4
E
196 200parallel
Strand 5
E
324 327parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
455 458first strand
Strand 2
E
440 444anti-parallel
Strand 3
E
591 593anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
196 199first strand
Strand 2
F
300 305parallel
Strand 3
F
255 260parallel
Strand 4
F
222 226parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
455 458first strand
Strand 2
F
440 444anti-parallel
Strand 3
F
591 593anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
222 226first strand
Strand 2
G
255 260parallel
Strand 3
G
300 306parallel
Strand 4
G
196 200parallel
Strand 5
G
325 327parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
455 458first strand
Strand 2
G
440 444anti-parallel
Strand 3
G
591 593anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il