Analysis of interatomic Contacts of Structural Units in PDB entry:
3KFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KFL entry

There is 1 chain in PDB entry 3KFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 207PRO 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3KFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
225 246Right-handed alpha
Helix 2
2
A
259 269Right-handed alpha
Helix 3
3
A
272 291Right-handed alpha
Helix 4
4
A
303 321Right-handed alpha
Helix 5
5
A
341 343Right-handed 310
Helix 6
6
A
378 380Right-handed 310
Helix 7
7
A
381 392Right-handed alpha
Helix 8
8
A
398 412Right-handed alpha
Helix 9
9
A
423 426Right-handed 310
Helix 10
10
A
441 448Right-handed alpha
Helix 11
11
A
448 455Right-handed alpha
Helix 12
12
A
487 493Right-handed alpha
Helix 13
13
A
493 502Right-handed alpha
Helix 14
14
A
532 541Right-handed alpha
Helix 15
15
A
541 553Right-handed alpha
Helix 16
16
A
562 573Right-handed alpha
Helix 17
17
A
577 587Right-handed alpha
Helix 18
18
A
603 626Right-handed alpha
Helix 19
19
A
628 651Right-handed alpha
Helix 20
20
A
651 656Right-handed alpha
Helix 21
21
A
659 682Right-handed alpha
Helix 22
22
A
685 697Right-handed alpha
Helix 23
23
A
699 703Right-handed 310
Helix 24
24
A
705 709Right-handed 310
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There are 6 sheets in PDB entry 3KFL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
249 256parallel
Strand 3
A
211 219parallel
Strand 4
A
480 484parallel
Strand 5
A
510 513parallel
Strand 6
A
396 397parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
323 333anti-parallel
Strand 3
A
367 376anti-parallel
Strand 4
A
416 417anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
355 359anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
435 440anti-parallel
Strand 3
A
431 432anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 458first strand
Strand 2
A
464 466anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 522first strand
Strand 2
A
516 518anti-parallel
Strand 3
A
559 560parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il