Analysis of interatomic Contacts of Structural Units in PDB entry:
3KJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3KJS entry

There are 3 chains in PDB entry 3KJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ILE 515
B	LEU 3	PRO 514
C	SER 2	ARG 278

There are 83 helices in PDB entry 3KJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	45	58	Right-handed alpha
Helix 2	2	A	78	84	Right-handed alpha
Helix 3	3	A	131	139	Right-handed alpha
Helix 4	4	A	156	164	Right-handed alpha
Helix 5	5	A	167	170	Right-handed 310
Helix 6	6	A	198	202	Right-handed 310
Helix 7	7	A	234	251	Right-handed alpha
Helix 8	8	A	275	278	Right-handed 310
Helix 9	9	A	288	301	Right-handed alpha
Helix 10	10	A	306	311	Right-handed alpha
Helix 11	11	A	317	322	Right-handed alpha
Helix 12	12	A	322	329	Right-handed alpha
Helix 13	13	A	343	350	Right-handed alpha
Helix 14	14	A	367	379	Right-handed alpha
Helix 15	15	A	394	398	Right-handed 310
Helix 16	16	A	429	449	Right-handed alpha
Helix 17	17	A	469	477	Right-handed alpha
Helix 18	18	A	495	499	Right-handed 310
Helix 19	19	A	500	502	Right-handed 310
Helix 20	20	B	45	58	Right-handed alpha
Helix 21	21	B	78	84	Right-handed alpha
Helix 22	22	B	85	89	Right-handed 310
Helix 23	23	B	104	109	Right-handed alpha
Helix 24	24	B	131	139	Right-handed alpha
Helix 25	25	B	156	164	Right-handed alpha
Helix 26	26	B	167	170	Right-handed 310
Helix 27	27	B	198	202	Right-handed 310
Helix 28	28	B	234	251	Right-handed alpha
Helix 29	29	B	275	278	Right-handed 310
Helix 30	30	B	288	301	Right-handed alpha
Helix 31	31	B	306	311	Right-handed alpha
Helix 32	32	B	317	322	Right-handed alpha
Helix 33	33	B	322	328	Right-handed alpha
Helix 34	34	B	343	350	Right-handed alpha
Helix 35	35	B	367	379	Right-handed alpha
Helix 36	36	B	394	398	Right-handed 310
Helix 37	37	B	429	449	Right-handed alpha
Helix 38	38	B	469	477	Right-handed alpha
Helix 39	39	B	495	499	Right-handed 310
Helix 40	40	B	500	502	Right-handed 310
Helix 41	41	C	45	58	Right-handed alpha
Helix 42	42	C	78	84	Right-handed alpha
Helix 43	43	C	85	89	Right-handed 310
Helix 44	44	C	104	110	Right-handed alpha
Helix 45	45	C	131	140	Right-handed alpha
Helix 46	46	C	156	164	Right-handed alpha
Helix 47	47	C	168	170	Right-handed 310
Helix 48	48	C	198	202	Right-handed 310
Helix 49	49	C	234	251	Right-handed alpha
Helix 50	50	C	275	278	Right-handed 310
Helix 51	51	C	288	301	Right-handed alpha
Helix 52	52	C	306	311	Right-handed alpha
Helix 53	53	C	317	322	Right-handed alpha
Helix 54	54	C	322	329	Right-handed alpha
Helix 55	55	C	342	350	Right-handed alpha
Helix 56	56	C	367	379	Right-handed alpha
Helix 57	57	C	394	398	Right-handed 310
Helix 58	58	C	429	449	Right-handed alpha
Helix 59	59	C	469	477	Right-handed alpha
Helix 60	60	C	495	499	Right-handed 310
Helix 61	61	C	500	502	Right-handed 310
Helix 62	62	D	13	17	Right-handed 310
Helix 63	63	D	45	58	Right-handed alpha
Helix 64	64	D	78	84	Right-handed alpha
Helix 65	65	D	85	89	Right-handed 310
Helix 66	66	D	104	109	Right-handed alpha
Helix 67	67	D	131	140	Right-handed alpha
Helix 68	68	D	156	164	Right-handed alpha
Helix 69	69	D	167	170	Right-handed 310
Helix 70	70	D	198	202	Right-handed 310
Helix 71	71	D	234	251	Right-handed alpha
Helix 72	72	D	275	278	Right-handed 310
Helix 73	73	D	288	301	Right-handed alpha
Helix 74	74	D	306	311	Right-handed alpha
Helix 75	75	D	317	322	Right-handed alpha
Helix 76	76	D	322	329	Right-handed alpha
Helix 77	77	D	343	350	Right-handed alpha
Helix 78	78	D	367	379	Right-handed alpha
Helix 79	79	D	394	398	Right-handed 310
Helix 80	80	D	429	449	Right-handed alpha
Helix 81	81	D	469	478	Right-handed alpha
Helix 82	82	D	495	499	Right-handed 310
Helix 83	83	D	500	502	Right-handed 310

There are 20 sheets in PDB entry 3KJS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	94	99	parallel
Strand 3	A	71	77	parallel
Strand 4	A	148	155	parallel
Strand 5	A	23	30	parallel
Strand 6	A	172	181	parallel
Strand 7	A	224	232	anti-parallel
Strand 8	A	206	211	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	94	99	parallel
Strand 3	A	71	77	parallel
Strand 4	A	148	155	parallel
Strand 5	A	23	30	parallel
Strand 6	A	172	181	parallel
Strand 7	A	224	232	anti-parallel
Strand 8	A	215	216	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	189	190	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	255	first strand
Strand 2	A	261	273	anti-parallel
Strand 3	A	452	466	anti-parallel
Strand 4	A	415	426	parallel
Strand 5	A	404	412	anti-parallel
Strand 6	A	386	388	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	489	first strand
Strand 2	A	504	507	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	94	99	parallel
Strand 3	B	71	77	parallel
Strand 4	B	148	155	parallel
Strand 5	B	23	30	parallel
Strand 6	B	172	181	parallel
Strand 7	B	224	232	anti-parallel
Strand 8	B	206	211	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	94	99	parallel
Strand 3	B	71	77	parallel
Strand 4	B	148	155	parallel
Strand 5	B	23	30	parallel
Strand 6	B	172	181	parallel
Strand 7	B	224	232	anti-parallel
Strand 8	B	215	216	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	189	190	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	255	first strand
Strand 2	B	261	273	anti-parallel
Strand 3	B	452	466	anti-parallel
Strand 4	B	415	426	parallel
Strand 5	B	404	412	anti-parallel
Strand 6	B	386	388	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	489	first strand
Strand 2	B	504	507	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	94	99	parallel
Strand 3	C	71	77	parallel
Strand 4	C	148	153	parallel
Strand 5	C	23	29	parallel
Strand 6	C	172	181	parallel
Strand 7	C	224	232	anti-parallel
Strand 8	C	206	211	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	94	99	parallel
Strand 3	C	71	77	parallel
Strand 4	C	148	153	parallel
Strand 5	C	23	29	parallel
Strand 6	C	172	181	parallel
Strand 7	C	224	232	anti-parallel
Strand 8	C	215	216	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	189	190	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	255	first strand
Strand 2	C	261	273	anti-parallel
Strand 3	C	452	466	anti-parallel
Strand 4	C	415	426	parallel
Strand 5	C	404	412	anti-parallel
Strand 6	C	386	388	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	489	first strand
Strand 2	C	504	507	anti-parallel

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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	94	99	parallel
Strand 3	D	71	77	parallel
Strand 4	D	148	153	parallel
Strand 5	D	23	29	parallel
Strand 6	D	172	180	parallel
Strand 7	D	224	232	anti-parallel
Strand 8	D	206	211	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	94	99	parallel
Strand 3	D	71	77	parallel
Strand 4	D	148	153	parallel
Strand 5	D	23	29	parallel
Strand 6	D	172	180	parallel
Strand 7	D	224	232	anti-parallel
Strand 8	D	215	216	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	189	190	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	255	first strand
Strand 2	D	261	273	anti-parallel
Strand 3	D	452	466	anti-parallel
Strand 4	D	415	426	parallel
Strand 5	D	404	412	anti-parallel
Strand 6	D	386	388	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	489	first strand
Strand 2	D	504	507	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3KJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
3KJS