Analysis of interatomic Contacts of Structural Units in PDB entry:
3KMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KMB entry

There are 3 chains in PDB entry 3KMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
ALA 73ALA 221
2
ALA 73ALA 221
3
ALA 73ALA 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3KMB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
1
74 103Right-handed alpha
Helix 2
2
1
121 131Right-handed alpha
Helix 3
3
1
141 151Right-handed alpha
Helix 4
4
1
200 202Right-handed 310
Helix 5
5
2
74 102Right-handed alpha
Helix 6
6
2
121 130Right-handed alpha
Helix 7
7
2
141 151Right-handed alpha
Helix 8
8
2
200 202Right-handed 310
Helix 9
9
3
74 102Right-handed alpha
Helix 10
10
3
121 130Right-handed alpha
Helix 11
11
3
141 151Right-handed alpha
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There are 7 sheets in PDB entry 3KMB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
111 114first strand
Strand 2
1
216 219anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
118 120first strand
Strand 2
1
212 214anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
195 198first strand
Strand 2
1
204 207anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
111 114first strand
Strand 2
2
216 219anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
195 198first strand
Strand 2
2
204 207anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
111 114first strand
Strand 2
3
216 219anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
195 198first strand
Strand 2
3
204 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il