Analysis of interatomic Contacts of Structural Units in PDB entry:
3KOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KOM entry

There are 4 chains in PDB entry 3KOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLY 158
A
 LEU 160VAL 663
B
 SER 4GLY 158
B
 LEU 160VAL 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 3KOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 25Right-handed alpha
Helix 2
2
A
29 46Right-handed alpha
Helix 3
3
A
69 81Right-handed alpha
Helix 4
4
A
85 90Right-handed alpha
Helix 5
5
A
119 140Right-handed alpha
Helix 6
6
A
156 162Right-handed alpha
Helix 7
7
A
162 176Right-handed alpha
Helix 8
8
A
194 198Right-handed 310
Helix 9
9
A
202 210Right-handed alpha
Helix 10
10
A
222 236Right-handed alpha
Helix 11
11
A
268 279Right-handed alpha
Helix 12
12
A
289 297Right-handed alpha
Helix 13
13
A
298 317Right-handed alpha
Helix 14
14
A
321 331Right-handed alpha
Helix 15
15
A
336 351Right-handed alpha
Helix 16
16
A
357 372Right-handed alpha
Helix 17
17
A
411 426Right-handed alpha
Helix 18
18
A
438 452Right-handed alpha
Helix 19
19
A
464 468Right-handed 310
Helix 20
20
A
478 485Right-handed alpha
Helix 21
21
A
496 510Right-handed alpha
Helix 22
22
A
530 538Right-handed alpha
Helix 23
23
A
559 574Right-handed alpha
Helix 24
24
A
585 591Right-handed alpha
Helix 25
25
A
593 601Right-handed alpha
Helix 26
26
A
615 622Right-handed 310
Helix 27
27
A
640 649Right-handed alpha
Helix 28
28
A
651 660Right-handed alpha
Helix 29
29
B
6 25Right-handed alpha
Helix 30
30
B
29 46Right-handed alpha
Helix 31
31
B
69 81Right-handed alpha
Helix 32
32
B
85 90Right-handed alpha
Helix 33
33
B
119 140Right-handed alpha
Helix 34
34
B
156 162Right-handed alpha
Helix 35
35
B
162 175Right-handed alpha
Helix 36
36
B
202 210Right-handed alpha
Helix 37
37
B
222 235Right-handed alpha
Helix 38
38
B
268 279Right-handed alpha
Helix 39
39
B
289 297Right-handed alpha
Helix 40
40
B
298 316Right-handed alpha
Helix 41
41
B
317 319Right-handed 310
Helix 42
42
B
321 331Right-handed alpha
Helix 43
43
B
336 351Right-handed alpha
Helix 44
44
B
356 372Right-handed alpha
Helix 45
45
B
411 426Right-handed alpha
Helix 46
46
B
438 452Right-handed alpha
Helix 47
47
B
464 468Right-handed 310
Helix 48
48
B
478 485Right-handed alpha
Helix 49
49
B
496 510Right-handed alpha
Helix 50
50
B
530 538Right-handed alpha
Helix 51
51
B
559 574Right-handed alpha
Helix 52
52
B
585 591Right-handed alpha
Helix 53
53
B
593 601Right-handed alpha
Helix 54
54
B
615 622Right-handed 310
Helix 55
55
B
640 649Right-handed alpha
Helix 56
56
B
651 660Right-handed alpha
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There are 7 sheets in PDB entry 3KOM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
151 155parallel
Strand 3
A
180 186parallel
Strand 4
A
241 246parallel
Strand 5
A
213 219parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
523 524anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
375 379parallel
Strand 3
A
429 435parallel
Strand 4
A
457 461parallel
Strand 5
A
515 518parallel
Strand 6
A
490 492parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 545first strand
Strand 2
A
579 582anti-parallel
Strand 3
A
553 556parallel
Strand 4
A
607 610parallel
Strand 5
A
627 630parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
151 155parallel
Strand 3
B
180 187parallel
Strand 4
B
241 247parallel
Strand 5
B
213 219parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 407first strand
Strand 2
B
375 379parallel
Strand 3
B
429 435parallel
Strand 4
B
457 461parallel
Strand 5
B
515 518parallel
Strand 6
B
490 492parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 545first strand
Strand 2
B
579 582anti-parallel
Strand 3
B
553 556parallel
Strand 4
B
607 610parallel
Strand 5
B
627 630parallel
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