Analysis of interatomic Contacts of Structural Units in PDB entry:
3KS9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KS9 entry

There are 2 chains in PDB entry 3KS9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 35ILE 512
B
 GLN 35ASP 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3KS9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 62Right-handed 310
Helix 2
2
A
75 91Right-handed alpha
Helix 3
3
A
111 124Right-handed alpha
Helix 4
4
A
164 176Right-handed alpha
Helix 5
5
A
177 179Right-handed 310
Helix 6
6
A
189 194Right-handed 310
Helix 7
7
A
208 222Right-handed alpha
Helix 8
8
A
234 251Right-handed alpha
Helix 9
9
A
266 279Right-handed alpha
Helix 10
10
A
292 307Right-handed alpha
Helix 11
11
A
323 328Right-handed alpha
Helix 12
12
A
330 335Right-handed alpha
Helix 13
13
A
347 355Right-handed alpha
Helix 14
14
A
367 376Right-handed alpha
Helix 15
15
A
409 432Right-handed alpha
Helix 16
16
A
439 443Right-handed 310
Helix 17
17
A
446 456Right-handed alpha
Helix 18
18
B
58 62Right-handed 310
Helix 19
19
B
75 92Right-handed alpha
Helix 20
20
B
111 125Right-handed alpha
Helix 21
21
B
164 176Right-handed alpha
Helix 22
22
B
177 179Right-handed 310
Helix 23
23
B
189 194Right-handed 310
Helix 24
24
B
208 222Right-handed alpha
Helix 25
25
B
234 249Right-handed alpha
Helix 26
26
B
266 280Right-handed alpha
Helix 27
27
B
292 307Right-handed alpha
Helix 28
28
B
323 328Right-handed alpha
Helix 29
29
B
330 335Right-handed alpha
Helix 30
30
B
347 355Right-handed alpha
Helix 31
31
B
367 376Right-handed alpha
Helix 32
32
B
409 432Right-handed alpha
Helix 33
33
B
439 443Right-handed 310
Helix 34
34
B
446 456Right-handed alpha
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There are 6 sheets in PDB entry 3KS9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
101 107anti-parallel
Strand 3
A
45 51parallel
Strand 4
A
156 160parallel
Strand 5
A
182 184parallel
Strand 6
A
201 203parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 261first strand
Strand 2
A
226 232parallel
Strand 3
A
286 290parallel
Strand 4
A
313 316parallel
Strand 5
A
338 342parallel
Strand 6
A
478 486anti-parallel
Strand 7
A
492 501anti-parallel
Strand 8
A
504 507anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 460first strand
Strand 2
A
466 468anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
101 107anti-parallel
Strand 3
B
45 51parallel
Strand 4
B
156 160parallel
Strand 5
B
182 184parallel
Strand 6
B
201 203parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 261first strand
Strand 2
B
226 232parallel
Strand 3
B
286 290parallel
Strand 4
B
313 316parallel
Strand 5
B
338 342parallel
Strand 6
B
478 486anti-parallel
Strand 7
B
492 501anti-parallel
Strand 8
B
504 507anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 460first strand
Strand 2
B
466 468anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il