Analysis of interatomic Contacts of Structural Units in PDB entry:
3KSX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KSX entry

There is 1 chain in PDB entry 3KSX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 25ALA 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3KSX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 49Right-handed alpha
Helix 2
2
A
49 55Right-handed alpha
Helix 3
3
A
67 77Right-handed alpha
Helix 4
4
A
87 96Right-handed alpha
Helix 5
5
A
109 111Right-handed 310
Helix 6
6
A
125 130Right-handed 310
Helix 7
7
A
140 153Right-handed alpha
Helix 8
8
A
156 160Right-handed 310
Helix 9
9
A
166 176Right-handed alpha
Helix 10
10
A
187 195Right-handed alpha
Helix 11
11
A
218 224Right-handed alpha
Helix 12
12
A
224 245Right-handed alpha
Helix 13
13
A
245 258Right-handed alpha
Helix 14
14
A
260 270Right-handed alpha
Helix 15
15
A
280 297Right-handed alpha
Helix 16
16
A
306 310Right-handed 310
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There are 2 sheets in PDB entry 3KSX. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
A
30 36parallel
Strand 3
A
82 86parallel
Strand 4
A
212 217anti-parallel
Strand 5
A
100 106anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
133 136parallel
Strand 3
A
181 185parallel
Strand 4
A
113 118anti-parallel
Strand 5
A
198 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il