Analysis of interatomic Contacts of Structural Units in PDB entry:
3KUL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3KUL entry

There are 3 chains in PDB entry 3KUL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 627GLU 900
B
 THR 627ALA 792
B
 THR 794PRO 899
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3KUL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
631 633Right-handed 310
Helix 2
2
A
674 689Right-handed alpha
Helix 3
3
A
704 708Right-handed 310
Helix 4
4
A
720 727Right-handed alpha
Helix 5
5
A
733 754Right-handed alpha
Helix 6
6
A
762 764Right-handed 310
Helix 7
7
A
801 805Right-handed 310
Helix 8
8
A
806 813Right-handed alpha
Helix 9
9
A
816 833Right-handed alpha
Helix 10
10
A
843 853Right-handed alpha
Helix 11
11
A
864 875Right-handed alpha
Helix 12
12
A
878 882Right-handed 310
Helix 13
13
A
884 898Right-handed alpha
Helix 14
14
B
631 633Right-handed 310
Helix 15
15
B
674 689Right-handed alpha
Helix 16
16
B
704 708Right-handed 310
Helix 17
17
B
720 727Right-handed alpha
Helix 18
18
B
733 754Right-handed alpha
Helix 19
19
B
762 764Right-handed 310
Helix 20
20
B
801 805Right-handed 310
Helix 21
21
B
806 813Right-handed alpha
Helix 22
22
B
816 833Right-handed alpha
Helix 23
23
B
843 853Right-handed alpha
Helix 24
24
B
864 875Right-handed alpha
Helix 25
25
B
878 882Right-handed 310
Helix 26
26
B
884 898Right-handed alpha
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There are 8 sheets in PDB entry 3KUL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 643first strand
Strand 2
A
647 654anti-parallel
Strand 3
A
662 669anti-parallel
Strand 4
A
710 714anti-parallel
Strand 5
A
699 703anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 757first strand
Strand 2
A
783 784anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
766 768first strand
Strand 2
A
774 776anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
793 794first strand
Strand 2
A
814 815anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
635 643first strand
Strand 2
B
647 656anti-parallel
Strand 3
B
659 669anti-parallel
Strand 4
B
710 714anti-parallel
Strand 5
B
699 703anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
756 757first strand
Strand 2
B
783 784anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
766 768first strand
Strand 2
B
774 776anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
793 794first strand
Strand 2
B
814 815anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il