Analysis of interatomic Contacts of Structural Units in PDB entry:
3LAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LAT entry

There are 2 chains in PDB entry 3LAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7GLY 213
B
 SER 7GLY 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3LAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 27Right-handed alpha
Helix 2
2
A
68 79Right-handed alpha
Helix 3
3
A
107 113Right-handed alpha
Helix 4
4
A
125 147Right-handed alpha
Helix 5
5
A
165 172Right-handed alpha
Helix 6
6
A
180 187Right-handed alpha
Helix 7
7
A
190 206Right-handed alpha
Helix 8
8
B
18 27Right-handed alpha
Helix 9
9
B
68 79Right-handed alpha
Helix 10
10
B
107 113Right-handed alpha
Helix 11
11
B
125 147Right-handed alpha
Helix 12
12
B
165 172Right-handed alpha
Helix 13
13
B
180 187Right-handed alpha
Helix 14
14
B
190 206Right-handed alpha
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There are 2 sheets in PDB entry 3LAT. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
94 96parallel
Strand 3
A
87 89anti-parallel
Strand 4
A
115 120parallel
Strand 5
A
56 61parallel
Strand 6
A
162 164parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
94 96parallel
Strand 3
B
87 89anti-parallel
Strand 4
B
115 120parallel
Strand 5
B
56 61parallel
Strand 6
B
162 164parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il