Analysis of interatomic Contacts of Structural Units in PDB entry:
3LHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LHD entry

There are 4 chains in PDB entry 3LHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1ILE 253
A
 MET 1ILE 253
B
 MET 1ILE 253
D
 MET 1ILE 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3LHD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
37 40Right-handed 310
Helix 2
2
C
62 70Right-handed alpha
Helix 3
3
C
78 90Right-handed alpha
Helix 4
4
C
105 116Right-handed alpha
Helix 5
5
C
127 141Right-handed alpha
Helix 6
6
C
142 145Right-handed 310
Helix 7
7
C
153 157Right-handed 310
Helix 8
8
C
172 175Right-handed 310
Helix 9
9
C
176 183Right-handed alpha
Helix 10
10
C
196 210Right-handed alpha
Helix 11
11
A
62 70Right-handed alpha
Helix 12
12
A
78 90Right-handed alpha
Helix 13
13
A
105 116Right-handed alpha
Helix 14
14
A
127 141Right-handed alpha
Helix 15
15
A
142 145Right-handed 310
Helix 16
16
A
172 175Right-handed 310
Helix 17
17
A
176 183Right-handed alpha
Helix 18
18
A
196 210Right-handed alpha
Helix 19
19
B
37 39Right-handed 310
Helix 20
20
B
62 69Right-handed alpha
Helix 21
21
B
78 90Right-handed alpha
Helix 22
22
B
105 116Right-handed alpha
Helix 23
23
B
127 141Right-handed alpha
Helix 24
24
B
153 157Right-handed 310
Helix 25
25
B
172 175Right-handed 310
Helix 26
26
B
176 183Right-handed alpha
Helix 27
27
B
196 210Right-handed alpha
Helix 28
28
D
37 40Right-handed 310
Helix 29
29
D
62 70Right-handed alpha
Helix 30
30
D
78 90Right-handed alpha
Helix 31
31
D
105 116Right-handed alpha
Helix 32
32
D
127 142Right-handed alpha
Helix 33
33
D
153 157Right-handed 310
Helix 34
34
D
172 175Right-handed 310
Helix 35
35
D
176 183Right-handed alpha
Helix 36
36
D
196 210Right-handed alpha
Helix 37
37
D
211 214Right-handed 310
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There are 13 sheets in PDB entry 3LHD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 21first strand
Strand 2
C
7 11anti-parallel
Strand 3
C
55 59anti-parallel
Strand 4
C
47 49anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 29first strand
Strand 2
C
32 35anti-parallel
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There are 14 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 151first strand
Strand 2
C
120 125parallel
Strand 3
C
96 100parallel
Strand 4
C
163 168parallel
Strand 5
C
184 194parallel
Strand 6
C
246 251anti-parallel
Strand 7
C
218 228anti-parallel
Strand 8
D
218 229anti-parallel
Strand 9
D
246 251anti-parallel
Strand 10
D
184 194anti-parallel
Strand 11
D
163 168parallel
Strand 12
D
96 100parallel
Strand 13
D
120 124parallel
Strand 14
D
147 150parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
235 236first strand
Strand 2
C
218 228anti-parallel
Strand 3
D
218 229anti-parallel
Strand 4
D
234 236anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
239 241first strand
Strand 2
A
239 241anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
7 11anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
47 49anti-parallel
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There are 14 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
120 125parallel
Strand 3
A
96 100parallel
Strand 4
A
163 168parallel
Strand 5
A
184 194parallel
Strand 6
A
246 251anti-parallel
Strand 7
A
218 230anti-parallel
Strand 8
B
218 229anti-parallel
Strand 9
B
246 251anti-parallel
Strand 10
B
184 194anti-parallel
Strand 11
B
163 168parallel
Strand 12
B
96 100parallel
Strand 13
B
120 125parallel
Strand 14
B
147 151parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
218 230anti-parallel
Strand 3
B
218 229anti-parallel
Strand 4
B
234 236anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
7 11anti-parallel
Strand 3
B
55 59anti-parallel
Strand 4
B
47 49anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
34 35anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
D
239 241anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 21first strand
Strand 2
D
7 11anti-parallel
Strand 3
D
55 59anti-parallel
Strand 4
D
47 49anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 29first strand
Strand 2
D
32 35anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il