Analysis of interatomic Contacts of Structural Units in PDB entry:
3LL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LL8 entry

There are 5 chains in PDB entry 3LL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
GLU 4GLU 14
A
THR 14ASN 370
B
ASP 15VAL 169
C
THR 14ASN 370
D
ASP 15VAL 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3LL8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
30 35Right-handed alpha
Helix 2
2
A
42 52Right-handed alpha
Helix 3
3
A
57 74Right-handed alpha
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
125 140Right-handed alpha
Helix 6
6
A
153 160Right-handed alpha
Helix 7
7
A
161 170Right-handed alpha
Helix 8
8
A
171 184Right-handed alpha
Helix 9
9
A
208 214Right-handed alpha
Helix 10
10
A
225 233Right-handed alpha
Helix 11
11
A
261 272Right-handed alpha
Helix 12
12
A
310 314Right-handed 310
Helix 13
13
A
343 347Right-handed 310
Helix 14
14
A
348 370Right-handed alpha
Helix 15
15
B
16 30Right-handed alpha
Helix 16
16
B
38 43Right-handed alpha
Helix 17
17
B
45 49Right-handed 310
Helix 18
18
B
53 62Right-handed alpha
Helix 19
19
B
70 79Right-handed alpha
Helix 20
20
B
80 82Right-handed 310
Helix 21
21
B
86 99Right-handed alpha
Helix 22
22
B
107 120Right-handed alpha
Helix 23
23
B
121 123Right-handed 310
Helix 24
24
B
124 140Right-handed alpha
Helix 25
25
B
148 157Right-handed alpha
Helix 26
26
B
158 165Right-handed 310
Helix 27
27
C
30 35Right-handed alpha
Helix 28
28
C
42 52Right-handed alpha
Helix 29
29
C
57 74Right-handed alpha
Helix 30
30
C
94 106Right-handed alpha
Helix 31
31
C
125 140Right-handed alpha
Helix 32
32
C
153 160Right-handed alpha
Helix 33
33
C
161 170Right-handed alpha
Helix 34
34
C
171 185Right-handed alpha
Helix 35
35
C
209 214Right-handed alpha
Helix 36
36
C
225 233Right-handed alpha
Helix 37
37
C
261 273Right-handed alpha
Helix 38
38
C
310 314Right-handed 310
Helix 39
39
C
343 347Right-handed 310
Helix 40
40
C
348 370Right-handed alpha
Helix 41
41
D
15 30Right-handed alpha
Helix 42
42
D
38 43Right-handed alpha
Helix 43
43
D
45 50Right-handed alpha
Helix 44
44
D
53 62Right-handed alpha
Helix 45
45
D
71 80Right-handed alpha
Helix 46
46
D
86 99Right-handed alpha
Helix 47
47
D
107 120Right-handed alpha
Helix 48
48
D
124 140Right-handed alpha
Helix 49
49
D
149 157Right-handed alpha
Helix 50
50
D
158 164Right-handed 310
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There are 8 sheets in PDB entry 3LL8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
7 12first strand
Strand 2
A
328 334parallel
Strand 3
A
319 325anti-parallel
Strand 4
A
85 88anti-parallel
Strand 5
A
113 115parallel
Strand 6
A
144 146parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
78 81first strand
Strand 2
A
188 191parallel
Strand 3
A
195 197anti-parallel
Strand 4
A
276 279parallel
Strand 5
A
302 305parallel
Strand 6
A
288 290anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
234 235first strand
Strand 2
A
258 260parallel
Strand 3
A
248 250anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
78 81first strand
Strand 2
C
188 191parallel
Strand 3
C
195 198anti-parallel
Strand 4
C
276 279parallel
Strand 5
C
302 305parallel
Strand 6
C
288 290anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
144 146first strand
Strand 2
C
113 115parallel
Strand 3
C
85 88parallel
Strand 4
C
319 325anti-parallel
Strand 5
C
328 334anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
234 235first strand
Strand 2
C
258 260parallel
Strand 3
C
248 250anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 37first strand
Strand 2
D
69 70anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
105 106first strand
Strand 2
D
147 148anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il